Pseudomonas putida BIRD-1: PPUBIRD1_4877
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Entry
PPUBIRD1_4877 CDS
T01975
Symbol
priA
Name
(GenBank) PriA
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPUBIRD1_4877 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_4877 (priA)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPUBIRD1_4877 (priA)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPUBIRD1_4877 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
PriA_3primeBD
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_16
AAA_30
Zn_ribbon_6
iSirtuin
HypA
TrwB_AAD_bind
AAA_22
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
ADR62430
LinkDB
All DBs
Position
5464371..5466590
Genome browser
AA seq
739 aa
AA seq
DB search
MSDVILRLALPSPLRRLFDYKAPASMARLTLTPGMRIRVPFGRREMIGVLIEVCTQSEVP
ADKLKPASALLDPVSPIPASLFKLCLWTAQYYQHSLGDTLSWALPTLLRQGEAAEMRQER
FWHIAPGARLEDPRIARAPRQRDALKTLAQHPHGVAHSLLAKLNLNKDSLDLLLAKDLVQ
IETRRHLPALRHEHWLAQPELPLNEEQREAFDAVCEGFGGFGAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGE
ADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRAHQENIPILLGS
ATPSLETLHNALTGRYRLLRMNQRAGGARPPRMLRLDVKSLPLDSGISGPLQQAIRQTLE
AGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRSGVLRCHHCGYDERLPHQC
PQCNHVDLRPVGAGTERAEERLKVLFPDYPILRVDRDSTARKDAMHNLFSTIQRGQPSIL
VGTQMLAKGHHFPRVTLVAILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVII
QTHLADHPLLVQLTEQGYFAFAEQALDERRAAGLPPYSHLALLRAEAHKPGQAEGFLDEA
CAAAERLVAEQHLPGIELLGPVPAPMERRAGRFRAQLLIQANTRAPLHRLISAWLLVLEQ
LPSGRQVRWSLDVDPVDLY
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacgtcatcctgcgccttgccctgccctctccgctgcggcgcctgttcgactac
aaggcgccggcgagcatggcgcgcctgaccttgacccctggcatgcgcatccgcgtgccc
tttggccgccgcgaaatgatcggcgtgctgatagaagtgtgcacgcagagcgaagtgccc
gccgacaaactgaagcctgccagcgccctgctcgacccggtgtcccccatccccgcatcg
ctgttcaagctgtgcctgtggaccgcccagtactaccagcacagcctgggcgataccctg
agctgggcgctgcccacgctactgcgccagggcgaagccgccgaaatgcgccaggaacgc
ttctggcacatagcccctggcgcccgcctggaagacccgcgcatcgcccgcgcgccgcgc
cagcgcgacgcactcaagaccctggctcagcacccgcacggcgtggcccacagcctgctg
gccaaactcaacctgaacaaggacagcctcgacctgctgctggccaaggacctggtacag
atcgagacgcgccgccacttgccggcactacgtcatgagcactggctggcacagccggaa
ctgccgctcaacgaagagcaacgcgaagccttcgacgccgtgtgcgagggttttggcggt
ttcggcgcgttcttgctggccggcgtcaccggcagtggcaagaccgaggtctacctgcaa
ctgatccgcgaaaccctggaagccggcaagcaggcgctggtgctgatcccggagatcaac
ctcggcccgcaaaccctggcccgcttcgagcaacgcttcaacgcgcgcattgccttgctg
cactctgcggtgaacgaccgcgaacgcctggatgcctggctggcggcacgggacggcgag
gccgatatcatcatcggcacccgctcggcattgttcacgccgatgaaaaaccccggcctg
atcatcatcgacgaagagcacgacggctcctataaacagcaggaaggcctgcggtaccac
gcccgcgacctggcgctggtccgcgctcaccaggagaacatcccgatcctgctcggctcc
gccacaccgtcgctggaaaccctgcataacgccctgaccggccgctaccgcctgctgcgt
atgaaccaacgcgccggaggggcacgcccgccgcgcatgctgcgccttgatgtgaagagc
ctgccactggacagcggcatcagcggcccgctgcagcaggctatccgacagaccctggag
gctggccaacaagtgctggtgttcctcaaccgccgcggctttgccccaaccttgctgtgc
cacgattgcggctggctgtccgaatgcccacgctgcgatgcacgcatgaccgtgcaccag
cgctccggcgtgctgcgctgccaccactgtggctatgacgaacgcctgccgcaccagtgc
ccgcaatgcaaccacgtcgacctgcgcccggtcggtgccggtaccgagcgcgccgaagag
cgcctgaaggtgctgttcccggattacccgatcctgcgcgtggaccgcgacagcacggcg
cgcaaggacgccatgcacaacctgttcagcactatccagcgcggccagccgagcatcctc
gtcggcacccagatgctcgccaagggccaccacttcccgcgggtgaccctggtggccatc
cttgatgccgatggcgggctgttttccggtgacttccgcgccagcgaacgcatggcacaa
cttatcgtacaggtggccgggcgggccgggcgggccgaagagcccggcaaggtcatcatc
cagacccacctggccgaccacccactgctggtccagctaaccgagcaaggctacttcgcc
ttcgccgaacaggccctggacgaacgccgagccgccgggctgccgccctactcgcatctg
gccttgctgcgtgccgaagcacacaagccggggcaggccgaaggtttcctcgacgaagcc
tgtgccgccgccgagcgcctggtggccgaacagcacctgccgggcatcgaactgctgggc
ccggtaccggcgcccatggagcgccgcgccggacgattccgcgcacaattgttgatacag
gccaatacccgggcgccgttgcatcgactgatcagcgcctggttgctagtgttggaacag
ttgccgagcgggcgccaggtgcgctggtcgctggatgtcgacccggtagacctgtattga
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