Pseudopropionibacterium propionicum: HMPREF9154_0888
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Entry
HMPREF9154_0888 CDS
T02180
Name
(GenBank) type III restriction enzyme, res subunit
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9154_0888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppc03019
]
HMPREF9154_0888
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_0888
Enzymes [BR:
ppc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF9154_0888
Messenger RNA biogenesis [BR:
ppc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF9154_0888
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF9154_0888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
Pribosyltran
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
AFN45828
LinkDB
All DBs
Position
954051..956213
Genome browser
AA seq
720 aa
AA seq
DB search
MEQNRATEQAGTRPLACELLRKLTGSEDAVFHDGQYEAIEALVVHHRRALVVQRTGWGKS
AVYFIAALLQRRAGAGPALIVSPLLALMRNQVEAAGRAGVRAATINSSNVTDWEEIAETL
EQDLLDVLLVSPERLVNPRFRDTQLPHLLARAGLVVIDEAHCISDWGHDFRPDYRRIRSL
IQELPDRVPVLATTATANQRVVTDVAEQLAVGGHEVFTLRGALARDSLRLGVLELGSSAR
RLAWLVEHLGSLPGSGIVYCLTVANAEDTAAALAAAGHRVLPYTGRTDLPERVAAEQALL
TNEVKALVATSALGMGFDKPDLGFVVHLGAPSSPVTYYQQVGRAGRATESADVLLLPGRE
DQEIWRYFATNAMPTRQRAASVLDALAASDVPLTVPALESRVELRRGALELLLKVLAVDG
AVENRAGGWAATGADWSYDEERYSRIAAARVAEQQAMLEYENLGHGRCRMEFLTAALDDP
HARPCGHCDTCTRPWYPTGVTAKAQVAAQSALERVGVVLEPRTQWPPGLDRFTGVMGGEV
VKGRIPLAERVEPGRVVARLTDLGHGNALRELFASDADGKPVDAEVPTQLAGACLQVLRE
WDWDERPVAVAWVPGLSRPRLVAALGEGLARAGRLHVLGPLGLAPGVAPLPRANSTFRVR
DLWTRFHVTPQQEAVLSGLSGPVLLVDDLVDSRWTMTVAGRLLKRAGARAVLPFALAATG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaaccgggccaccgaacaggccggaacacgtcccctggcctgcgaattgctg
cggaaactcacaggaagtgaggatgcggtcttccacgacgggcagtacgaggccatcgag
gccctcgtcgtccatcaccggcgggccttggtggtgcagcgcaccggctggggaaaatcg
gcggtctacttcatagccgcgctgctgcaacgccgggcgggcgccggtcccgcgctgatc
gtctccccgctgctggcgttgatgcgcaaccaggtggaggccgccgggcgcgccggggtg
cgggccgccaccatcaactcgtcgaacgtcaccgactgggaggagatcgccgagaccctc
gaacaggacctcctcgacgtcctcctggtctccccggaacgcctggtcaacccccgtttc
cgggacacccagctgcctcatctgctcgcgcgggcgggcctagtggtgattgacgaggcc
cattgcatcagcgactggggccacgacttccgtcccgactaccggcggatccgttccctg
atccaggagctgccggaccgggtcccggtgctggccaccaccgcgacggccaaccagcgg
gtggtcaccgacgtcgccgagcagctggccgtcggcgggcacgaggtgttcacgctgcgc
ggggccctggcgcgcgactccctgcggctcggggtgctggaactgggatcgtcggcgcgg
cggctggcgtggctggtcgagcatctcggttcgctgcccggcagcggcatcgtctactgc
ctgaccgtcgcgaacgccgaggacaccgcggcggctctggcggccgccgggcaccgggtc
ctgccgtacacgggtcgcacggacctgcccgagcgggtcgcggccgagcaggccctgctc
accaacgaggtgaaggccctggtggccacctcggcgctggggatgggattcgacaaaccc
gatctcgggttcgtggtccacctcggcgccccgagctccccggttacctattaccagcag
gtgggacgcgcgggccgcgccaccgagtccgccgacgtgttgctgctcccagggcgcgag
gaccaggagatctggcggtatttcgccaccaacgccatgcccacccggcagcgggccgca
tcggtgctggacgccctggcggcctcggatgtgccgctgaccgtgcccgccctggagtcg
cgggtggagctgcgtcgcggtgccctggagctgctgctgaaggtgctggcggtcgacggt
gccgtggagaaccgcgccgggggatgggcggcgaccggcgcggactggagctacgacgag
gaacgctactcgcgcatcgccgccgcgcgggtcgcggagcagcaggccatgctcgaatac
gagaacctcgggcacggccggtgccggatggagttcctgacggcggcgctggacgacccg
cacgcgaggccctgcgggcactgcgacacctgcacccggccgtggtatcccaccggggtg
acggctaaggcacaggtcgcggcgcagtcggcgctggaacgggtgggggtggtcctcgaa
ccgcgcacccagtggccgcccgggctggatcgtttcaccggtgtcatgggtggcgaggtc
gtcaagggccggatcccgctggcggaacgcgtcgaacccggccgcgtcgtggcccgcctg
accgacctcggccacggcaatgcgctgcgcgagctgttcgcctcggacgccgacggcaag
ccggtcgacgccgaggtgccgacgcaactggccggggcgtgcctccaggtgctccgtgag
tgggactgggacgagcgtccagtcgccgtcgcctgggttcccggcctgtcgcgtccccgg
ctggtcgcagccctgggggaaggactggccagggccggccggcttcatgtcctcggaccc
ctcgggctggcgcccggcgtcgccccgctgcccagggcgaacagcacgttccgggtgcgg
gacctgtggacccggttccacgtcaccccgcaacaggaggcggtgctgtctggcctgtcc
ggaccggtactactcgtggacgacctggtcgattcacgctggaccatgacggtcgcgggg
cgtctcctgaaacgggccggggcgagggccgttctgcccttcgccctcgctgccacgggg
tga
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