Pseudopropionibacterium propionicum: HMPREF9154_1373
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Entry
HMPREF9154_1373 CDS
T02180
Name
(GenBank) YmdA/YtgF family protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9154_1373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppc03019
]
HMPREF9154_1373
Messenger RNA biogenesis [BR:
ppc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF9154_1373
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFN47824
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All DBs
Position
1499123..1500730
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AA seq
535 aa
AA seq
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MEWLGWIIAGLLGVVLGILAWRQRRVALSFIQERARIERRSRSDAASIRKQAVEAAEQLR
ADAERALEQAKEWAHEAGADIDRRREELEASIATQRAELREQRSAQERQEERLNEKEDRL
AAEAEGLATRSELLEQQRTDLRKQREELAAEQGRVQMELERVAGLTANAAQAEVMAEAAR
QARLSAATLARDIEETAKKEADQRARAIVVTAIQRCAAEQTSESVVSSVDLPGDEMKGRI
IGREGRNIRAFEQITGVNVMVDDTPETVLLSCFDPVRREAARLTLMDLVADGRIHPARIE
EVHARSIRVLDERIRAVGNEALLEVGIADLHPELIPVVGSLAYRTSFGQNVLAHLIECSH
LAGIMAAELGLDVAQCKRAAFLHDIGKALTHESEGPHAIIGADLLRRHGEHPDVVHAVEA
HHNEVEPRTVEAILTQAADAISGSRPGARRESLEAYVERMQHLESIAMAHEGVTRAYAMQ
AGREVRIMVAPEVVDDAMSRVLAREIAAEVEANLTYPGQIRITVVRESRATELAH
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaatggctgggctggatcatcgctgggttgctgggtgtcgtcctggggatcctcgcc
tggcggcagcggcgagttgccctgtcgttcattcaggaacgggctcgcatcgaacgcaga
agccgctccgatgcagcatccatccgcaaacaggcggtggaggcagccgagcagctcagg
gcggatgcggaacgggccctggaacaggcgaaggaatgggcgcacgaggccggcgccgac
atcgacaggcgccgcgaggagttggaggcgtcgatagccactcagcgcgccgagctgcgc
gagcagcgcagcgcgcaggaacgccaggaagaacgcctgaacgagaaggaggaccggctc
gccgcggaggccgagggactcgcgacgcgctcggagcttctcgagcagcagcgcacggat
ctcaggaaacagcgcgaggaactcgctgcggaacagggccgcgtgcagatggagcttgaa
cgtgtggcggggttgacggcgaacgccgcccaggcggaggtgatggcagaggcggcacgc
caggcccgtttgtcagctgccaccctggcccgggacatcgaggagaccgcgaagaaggaa
gcggaccagcgggcccgggcgatagtcgtgaccgccatccagcggtgcgcggcagagcag
accagcgagtcggtggtttccagcgtcgaccttcccggcgacgagatgaaggggcggatc
atcgggcgtgagggccgcaacatcagggccttcgagcagatcaccggagtcaacgtgatg
gtggacgacaccccggagacggtgctgctcagctgctttgacccggtgagacgggaagcc
gcccggctgaccctcatggacctggtcgccgacgggcgtattcatccggcaagaatcgag
gaggtgcacgcccgcagcatccgggtgctggacgagcgcatcagggcggtcggtaacgag
gccctcctggaggtgggaatcgccgatctccacccggaactgatacccgtggtcggctcc
ttggcctaccgcaccagcttcgggcagaacgtgctcgcccacctgatcgagtgctcccat
ctggccgggatcatggcggccgaactggggctcgacgtggcgcagtgcaagagagcagcc
ttcctgcacgacataggcaaggccctgacccacgagtccgaaggaccccatgcgatcatt
ggcgccgacctgctgcgccgccacggcgaacaccccgacgtggtccacgcggtcgaggcg
caccacaacgaggtcgagccccggaccgtcgaggcgatcctcacccaggcggcagatgcc
atctccggttcccgccctggcgctaggcgcgagtccctggaggcctacgtggagcggatg
cagcatcttgaatccatcgcaatggcccacgagggagtgacccgcgcctacgcaatgcag
gcgggaagggaggtccggatcatggtggcacccgaggtcgtggatgacgcgatgagccgg
gtgctggcacgcgagatcgcggccgaggtggaggcgaacctcacctatccggggcagatc
cgcatcacggtggtgcgtgagtcacgcgccaccgaactggctcactga
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