Pseudopropionibacterium propionicum: HMPREF9154_1827
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Entry
HMPREF9154_1827 CDS
T02180
Name
(GenBank) ribonuclease E/G family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF9154_1827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppc03019
]
HMPREF9154_1827
03009 Ribosome biogenesis [BR:
ppc03009
]
HMPREF9154_1827
Enzymes [BR:
ppc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMPREF9154_1827
Messenger RNA biogenesis [BR:
ppc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF9154_1827
Ribosome biogenesis [BR:
ppc03009
]
Prokaryotic type
rRNA processing factors
HMPREF9154_1827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
AFN47028
LinkDB
All DBs
Position
complement(1980445..1983090)
Genome browser
AA seq
881 aa
AA seq
DB search
MRPKESYMTETNQESAAPELPARPRVHQLAKHLGITSRELLAELAQLGHELRSASSVVVA
DVVTAVLEARAPQPEEEILEEDASGTETPSEPETRSETITEPQPEPAPRQRRRRAASRPA
GPPVDVDIPVETPVTTAATPEPTEATEPEPAREPAPRQRHRRATRAAGGPDHPQTTPAET
PEAETRTEPEPAGEEPAPEPAPRQRRRRATRAAGAAKTEKTEPTEQADTDGQDGQETAED
GIAAALRIAEEAAKARRATMKDPFAITAEGRTESLAKLASAIAEDSADAVETESGSEESP
EETAEASPEAEEERPGRRRRRRGGRRRRRGSNAEETTGEDTDDESSDGESGDDSAEKNET
SGQEETAEGDGESDEETGTRRRRRRRRRSSGSESKGGTGDEVTGIEGSTRMEAKRQRRKE
NRAAGRRRAPILSEAEFLARRESVDRKLVIRQREDYTQLAVVEDGILVEHYVDRASATSL
IGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDSYGVTAEDRKVEKVFKSGQTV
LVQVTKDPIGAKGARLTGHISLPGRYIVYSPGGHLSGISRKLPDVERTRLRRILGELIGD
NESVIVRTAAEGVAAEELVRDVNRLKAQWEVIEKKVKAGKAPEALYSEPDLTLRIVRDLF
TEDFAKLTVQGDDAHEAISAYVGHVAPHLTDRIERFEPGEDGRDLFAQYRIDEQIAKALD
RKVFLPSGGSLVIDRTEAMTVIDVNTGRFTGSGGNLEATVTSNNLEAAEEIVRQLRLRDL
GGIVVIDFIDMVLPSNRELLLRRLVECLGRDRTRHQVAEVTSLGLVQLTRKRIGTGLAEA
FTEECDHCHGSGYLRFDNPVDSQAPADGGERRSGRRRRKNG
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgaaggagtcgtacatgaccgaaaccaatcaagaatccgctgcccccgagctg
cccgcgcgtccccgagtccatcaactcgccaaacatctcgggatcaccagcagggagctg
ctggccgaactcgcgcagctcggacacgagttgcgcagcgcttcctccgtggtggtggcc
gacgtggtgaccgctgtgctcgaggcccgtgcaccgcaacccgaggaggaaatcctggaa
gaggatgcctccgggacggaaaccccctccgaacccgaaacccggtccgagacgatcacg
gaaccacagccggaacccgccccgaggcaacgacgccgccgcgccgcctcccgccccgcc
ggtccgcccgtcgatgtggacatccccgtggaaacgcccgtgaccaccgccgccaccccg
gaacccaccgaggccaccgaaccggaaccggcccgggaaccggcccccaggcagcggcac
cgccgcgccacccgggccgcgggcgggccggatcacccacagaccaccccggccgagacc
cccgaagccgaaacccgaactgaaccggaacccgcaggggaggaaccggcacccgaaccc
gcgcccaggcagcggcggcgccgcgccacccgggccgccggggcagccaagacggagaaa
accgaaccgaccgagcaggccgacaccgacgggcaggacgggcaggagaccgcggaggac
ggcatcgcggccgcgttgcgcatcgctgaggaggccgccaaggcccgtcgcgccacgatg
aaggacccgttcgccattaccgccgagggccgcaccgaatcgttggcgaaactggccagc
gccatcgccgaggactccgcggatgctgtcgaaaccgagtccggctccgaggagagcccg
gaggagacagcagaggcgagtcccgaggccgaggaggaacgtcccggcaggcgtcgccgc
cgccgcggcggcaggcgtcgccgccgtggttccaacgccgaggagacgaccggtgaggac
accgacgacgaatcatcggatggggaatccggcgacgactcggccgagaagaacgagacc
tccgggcaggaggaaaccgccgagggggatggtgaatccgacgaggagaccgggacccgt
cgtcgccgtcgtcgtcgccgtcgctccagcggctccgaatcgaagggcggcaccggggac
gaggtgaccgggatcgagggctccacccgcatggaggccaaacggcagcgccgcaaggag
aaccgtgccgcgggtcgtcgacgcgccccgatcctctccgaagccgagttcctggcgcgc
cgcgaatccgtggaccggaaactcgtgatccgccagcgggaggactacacccagctcgcc
gtggtcgaggacgggatcctcgtcgagcactacgtggatcgcgcatccgccacgtccctg
atcggcaacgtctacctggggcgcgtgcagaacgtgcttcccagcatggaggcggcgttc
atcgacatcgggcgggggcgcaacgccgtgctctacgcgggcgaggtggactgggactcc
tacggggtcaccgccgaggaccgcaaggtggagaaggtgttcaagtccgggcagacggtg
ctcgtgcaggtcaccaaggatcccatcggggccaagggtgcgcgcctcaccgggcacatc
tccctgcccggccgctacatcgtgtactcaccgggcgggcacctgtccgggatctcccgc
aaacttccggacgtggaacgcacccggttgaggcggatcctcggtgaactgatcggcgac
aacgaatccgtgatcgtgcgcaccgcagccgagggagtggccgccgaggagctggtgcgc
gacgtcaaccggctcaaggcccagtgggaggtcatcgagaagaaggtgaaggcgggcaag
gcccccgaggccctctactccgaacccgacctgacgttgcgcatcgtccgcgacctgttc
accgaggatttcgcgaagctgaccgtccagggcgacgacgcccacgaggcgatctcggcc
tacgtcgggcacgtcgccccccacctgacggatcgcatcgaacggttcgaaccgggcgag
gacggccgcgacctgttcgcgcaataccgcatcgacgagcagatcgccaaggccctcgac
cgcaaggtcttcctgccctccggagggtcgctggtgatcgaccgcaccgaggcgatgacc
gtcatcgacgtcaacacgggccggttcacgggctccggcggcaacctcgaggccaccgtc
accagcaacaacctggaggcagccgaggagatcgtcaggcagctgaggctgcgcgacctc
ggtggcatcgtcgtcatcgacttcatcgacatggtgctgcccagcaaccgtgaactgctg
ctgcggcgcctcgtcgagtgcctgggccgcgaccgcaccaggcaccaggtggcggaggtc
accagcctggggttggtgcagctgacccgcaaacgcatcggaaccggactggcggaggcg
ttcacggaggagtgcgatcactgccacggctccggctatctgcgtttcgacaaccccgtc
gactcgcaggccccggccgatggcggcgaacgcaggtccggacgtcgccgcaggaagaac
ggttaa
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