Pseudopropionibacterium propionicum: HMPREF9154_1941
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Entry
HMPREF9154_1941 CDS
T02180
Name
(GenBank) exodeoxyribonuclease V, gamma subunit domain protein
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMPREF9154_1941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_1941
Enzymes [BR:
ppc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HMPREF9154_1941
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF9154_1941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecC_C
Exonuc_V_gamma
Lcl_C
Motif
Other DBs
NCBI-ProteinID:
AFN45299
LinkDB
All DBs
Position
2118379..2121270
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AA seq
963 aa
AA seq
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MDRRSAECWEELIDALAAWLDELRPGPLERVRIITSSAATARLAGQALAARIGILAGVDL
IPADRWVAQLQAELGDGESSPWRGLALELAIREVLQDPEFRDSHPVVAEHLRAGPGRLRG
TSQRLAVLLRRYSEHHPDLLARWLADPEEAAEELPGHLRWQPELAVRVTEILEWDPVEEL
TRLRAALAETPGPATAVLHCPDLPAATQLLVEAIDRVRDVLVLKLVNAAVPERITWLGSH
DPLRQAEVLREELCRILQEDPGLEPRDVLVVVPDPAAWWPALGLAFAPLEGSSHPGRRLR
LQAPPEVRIPNPVLRTLAEATGLRDSRATASSLLDLLSLTPISYRWRLPERDELARLIDA
AGIRWGLDAQHRADQGLPGIAQNTWARGLDRLLAGLTLAPGSTALPISGVDAVGTSELEL
IGSLTEIFTRLRRYAATAEPATLPEWVARARGLLDELVDLPPGDDSLLQEATSRLARLAE
EGSASPVRVTASDFTRLLEQLAAEPTPRLGVGNGNLTVVGPGELKGVAFPVVVLLGFEDG
GLDPVPDAIPGILPDPGQERLEDLLDHAWAARHLVVVHQHRSETTDAVLEHPTTLTWLWR
RLGVTPELREVPLASHSERNFTGPYPSFDASSFEMARRLRTGSAGAAPASAVRRRAALQL
PVGDDTGPMSLDEAARFLRDPAAAFLRERAGIRGSFAPEISDDLPLSAAGLDAWGIRSRL
LVAARGGQPPDEAIRAEARRELLPTGPMGGAALDADVELVRRLWQQARPDWERPVRDVPV
DLDCSGLRLTGTVRLRGDELVVISPSDLPRPLFEPWVQLLALAASGFRTRARIHHLRRHY
GEFFPGSVTLNPPQEAAAHLEVLVRGARLSRSRLVPVPAEPARALAKSARERRFNGADWD
LPTNSWNSPWAWRPEHWEHFYTGPASELFTDPPQDGDPAGPERFGAFGGWALALHSPLLE
AAR
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
gtggacaggagatcggccgagtgctgggaggagttgatcgacgccctggcggcgtggctg
gacgaactgcgccccgggccgctggaacgggtgcggatcatcacttcctcggccgccacc
gcacgcctggcgggacaggccctagccgcccggatcggcatcctggcaggggtggatctg
attccggccgaccgctgggtggcgcagctgcaggcggaactgggcgacggggaatcgtcc
ccgtggcgaggcctggcattggaactggcgatccgggaggtcctccaggacccggagttc
cgggattcgcatcccgtggtggcggagcatctcagagcaggcccgggcaggctgcgcggc
acctcgcaacgcctggcagtcctgctgcgccgctactcggagcaccacccggacctcctg
gcccgctggctcgccgaccccgaggaggccgccgaggaactaccggggcacctgcgctgg
caaccggagctggcggtgcgcgtcaccgagatcctcgaatgggatccggtcgaggagctg
acgcggctgcgcgccgccctggcggagacgcccggaccggccacggccgtgctgcactgc
cccgacctgcccgcggcgacgcagctgctggtggaggccatcgaccgggtccgggatgtc
ctagtcctgaagcttgtaaacgccgcggtgccggagaggatcacctggctgggttcccac
gatcccctgcggcaggccgaggtgttgcgcgaggaactgtgccgcatcctgcaggaggat
cccggcctggagccacgcgacgtcctggtggtcgttcccgatcccgcggcctggtggccc
gccctcggcctggccttcgcgccactcgagggcagttctcacccgggccggcgcctgcgg
ctccaggcaccccccgaggtccggatccccaaccccgtgctgcgcaccttggccgaagcc
accgggctgcgggattcccgcgccaccgccagttccctgctggacctgctgagcctcacg
ccgatctcttaccgctggcggctgccggaacgcgacgaactggcccggctgatcgacgcc
gccgggattcgctggggcctcgacgcccagcaccgcgcggaccaggggcttcccgggatc
gctcagaacacctgggcccggggcctcgaccggctgctggccgggctcaccctggccccc
gggagcaccgccctgcccatctccggcgtggatgccgtcggtacatcggagctggagctg
atcggttcgctcacggagattttcacccggctgcggcgctacgcggccaccgccgaaccc
gccacccttccggaatgggtcgcccgggcccggggattgcttgacgagctcgtcgacctg
ccccccggagacgactcattgctccaggaggccacctcccgcttggcgcggctggcggag
gaggggtccgccagccccgtcagggtgacggcctccgacttcacccggctgctggagcag
ctcgccgccgaacccacgccgcgcttgggggtcggcaatggcaatctcaccgtcgtcggc
ccgggagaactcaagggcgtggccttccccgtggtcgtgctgctcggtttcgaggacggc
gggctcgatcccgttcctgacgcgatccccggcatcctgccggatcccggacaggagcgc
ctggaggacctgctggatcacgcctgggccgcccggcacctggtggtggtgcatcagcac
cgctccgagaccaccgacgccgtcctggagcacccgaccaccctcacctggctgtggcgc
cggctgggtgtcacacccgaactgcgggaggtgcccctggcatcgcattcggagaggaac
ttcacgggcccctacccgagtttcgacgcctcctccttcgaaatggcccgccgcctgcga
accgggtccgccggggccgcaccggccagcgcggtgcgtcgcagggccgccctccagctg
cctgtcggcgacgacaccggccccatgtccctggacgaggcggcccggttcctgcgcgat
cccgcggccgcgttcctgcgtgagcgggcggggatccggggaagcttcgcaccggagatc
agcgacgacctgccgctcagcgcggccgggttggacgcctgggggattcgttcccggctg
ctggtagcggcccgcggcgggcagccccccgacgaggcgatccgcgccgaggcgcgcagg
gagctgctgcccaccggccccatgggtggtgcggctctcgacgcggacgtggaactggtc
cggcggctctggcagcaggcccgtccggactgggagcgtccggtccgcgacgtccccgtc
gacctggactgctccggcctgcggctgacgggcacggtgcggctgcgcggcgacgaactg
gtggtcatctcccccagcgaccttccccgtcccctgttcgagccctgggtgcagctgctg
gccctggcggcctccgggttcaggacgcgggcccgcatccatcacctgcgacgccactac
ggcgagttcttcccgggatctgtgacgctcaacccaccccaggaggcagccgcgcacctg
gaggttctggtgcgaggcgcccgcctgagtcgttccaggctcgtcccggttcccgcggaa
ccggcccgggcgctggcaaagtcggcccgggaacgaagattcaacggcgccgactgggat
ctgcccaccaacagctggaactccccctgggcctggcgcccggagcactgggagcatttc
tacaccggccccgcctcggaactgttcaccgatccaccccaggacggcgacccggcgggt
cccgaacgtttcggcgccttcgggggctgggcgctggccctgcactcccccctcctggag
gccgcacgatga
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