Pseudopropionibacterium propionicum: HMPREF9154_1943
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Entry
HMPREF9154_1943 CDS
T02180
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMPREF9154_1943 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_1943 (recD)
Enzymes [BR:
ppc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HMPREF9154_1943 (recD)
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF9154_1943 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
UvrD-helicase
AAA_22
NAT10_TcmA_helicase
nSTAND3
MeaB
TrwB_AAD_bind
NTPase_1
SLFN-g3_helicase
NPHP3_N
AAA_16
Herpes_Helicase
AAA_5
NACHT
AAA_28
DEAD
nSTAND_NTPase5
AAA_29
AAA_33
PPK2
Flavi_DEAD
AAA_17
FtsK_SpoIIIE
PIF1
Zeta_toxin
T2SSE
cobW
GvpD_P-loop
ATP_bind_1
Motif
Other DBs
NCBI-ProteinID:
AFN45097
LinkDB
All DBs
Position
2124440..2126173
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AA seq
577 aa
AA seq
DB search
MAATGLLRAFAEAGMIHVADFHLARRMAAYCGESDDQVLLALALTVRELRLGSVCLDLAC
APELIVPGEADDGSVVEPVELPWPEPQAWAAAVAASSAVAGPGTGPRPFRLADGLLYLDR
FFTEEQELAARLRHRSALPDLPSPEPPAPGPGMVPDPTQDAAVRAATRARTCVITGGPGS
GKTTVVSRIIDALAPRGPVTVALTAPTGKAATRLETAVRGRLRYPERVALTAGTLHRIIG
VVPGRAEHTHGALNPLPFDVVIVDETSMVSITLMSWLLEAVADSTRLVLIGDPNQLASVE
AGAVLADISAAPDLITSPGGPAVVRLGGSHRNLDDVARLADSIRDGDADGCLALLERSAT
CTLTPYSGTESLTDLPALASDVEAAARDARGAALAGDGDRAVRALEQHRLLCAHREGSFG
TGHWQQAVRRHLAATLPGYAPEVGQYPGQPLIVTRNSDVVSNGDVAVIVDSDGRLLAAVD
RGGQAELLNPLLLEAAQELHAMTIHKSQGSQFERVSVILPPQGSPLLTRELLYTAVTRAE
SGVQLYGSPEALRKAIGTRARRASGLVRTTAPGNEKR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtggcggccacgggactgctgagggcctttgccgaggccgggatgattcacgtggccgat
ttccatctggcccgccggatggccgcgtactgcggggagagcgacgaccaggtgctgctg
gccctcgctctgacggtgcgggagctgcgcctgggttcggtgtgcctggacctggcctgc
gcgcccgagttgatcgttccgggcgaggccgacgacggatcggttgtggaacccgtcgag
ctgccctggccggaaccgcaagcatgggccgcggcggtggcggcctcatctgcggtggcg
ggcccggggaccgggccgcggccgttccgcctggccgatggtctgctgtacctggaccgg
tttttcacggaggaacaagaactggccgcacgcctcaggcaccgcagcgcgctgccggac
ctgccctcccccgaacctcccgcgcccgggcccggcatggtgcccgaccccacccaggat
gccgcggtccgggcggccaccagggcccgcacctgcgtcataacgggcggtcccgggtcc
ggcaagacgacggtggtctcccggatcatcgatgcgctcgccccccggggaccggtaacc
gtcgccctgaccgcccccaccgggaaggccgccacccgcttggagaccgcggtgcgcggc
aggttgcggtacccggaacgggtcgccctgaccgccggcacgctgcaccggatcatcggc
gtggtcccgggccgcgcggaacacacccacggcgcgctgaacccgttgcccttcgacgtg
gtgatcgtggacgagacgtcgatggtgtcgatcacgctgatgtcgtggctgctggaggcg
gtggccgactccacccggctggtcctgatcggcgacccgaaccagctggcctccgtggag
gcgggggcggtgcttgccgacatctccgccgctccggacctgatcacatccccgggaggg
ccggccgtggtgcggctcggcggcagccaccgcaacctcgacgacgtggcccggctggcc
gattccatccgcgacggcgacgcggacggctgcctggcgctgctggaacgatcggcgacg
tgcacgctcaccccatacagcggcaccgagtcgctcaccgacctgcctgcgctggcctcc
gacgtcgaggccgccgcccgcgatgcccggggcgccgcgctggcaggtgacggcgaccgg
gccgtgcgggccctggagcagcaccggttgctgtgcgcgcaccgggaggggtccttcggc
accgggcactggcagcaggcggtgcgcaggcacttggctgcgacgctgcccggttacgca
cccgaggtcggccagtacccggggcaaccattgatcgtcacccgcaactcggatgtggtc
agcaatggcgatgtggcggtgatcgtcgacagcgatggacggctgctggccgccgtggac
cggggcggtcaggcggagttgctgaacccgctgttgctggaagcggcacaggaactgcac
gccatgaccatccacaagtcgcagggcagccagttcgagcgggtcagcgtgatcctgccc
cctcagggatcaccactgctgacccgggagctgctgtacacggccgtcacccgcgccgaa
tcgggggtccagctgtacggctctcccgaggcgctgcggaaggccatagggacccgggcc
agacgggcgagcggtttggtcaggaccacggcccctggaaacgagaaacgctaa
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