Pseudopropionibacterium propionicum: HMPREF9154_2225
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Entry
HMPREF9154_2225 CDS
T02180
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9154_2225 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppc03021
]
HMPREF9154_2225 (rpoA)
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_2225 (rpoA)
Enzymes [BR:
ppc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9154_2225 (rpoA)
Transcription machinery [BR:
ppc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9154_2225 (rpoA)
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9154_2225 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
AFN46114
LinkDB
All DBs
Position
complement(2421716..2422762)
Genome browser
AA seq
348 aa
AA seq
DB search
MLIAQRPTLSEETVSEYRSRFIIEPLEPGFGYTLGNSMRRTLLSSIPGAAVTSIKIEGNQ
HEFSTLEGVVEDVTEIILNLKSLVLSSEEDEPVVMYLRKAGAGEVTAADIQPPAGVEVHN
PELHIATLSEGGKLEMELVVERGRGYVSSVLNKDPDAEIGRIPVDSIYSPVLKVSYKVEA
TRVAQRTDFDRLIIDVETKPSMAPRDAVASAGRTLVELFGLARELNVNAEGIEMGPSPVD
EQIAESLNLPVEDLNLSVRSYNCLKREGIHTVGELVARSEEDLLDIRNFGSKSILEVKVT
LHNLGLALRDAAPGFDPIQAIERYDQEHEGEEDIDAETDDDYAETEQY
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcgcacagcgtccgaccttgtcggaggagacggtttccgagtaccgttcgcgg
ttcatcatcgagcccctcgaacccggcttcggctacaccctcggcaactcgatgcgccgc
accctgttgtcgtccatcccgggtgcggccgtgacctccatcaagatcgagggaaatcag
cacgagttctccaccctggagggtgtggtcgaggatgtcaccgagatcatcctgaacctg
aagagcctggttctgtcctccgaggaggacgagcccgtggtcatgtacctgcgcaaggcg
ggagccggtgaggtcaccgcggccgacatccagcctccggccggggtcgaggtgcacaat
cccgaactgcacatcgccaccctcagcgaaggcggcaaactcgagatggagctggtggtc
gaacgcggccggggctacgtctccagtgtcctcaacaaggatcccgacgccgagatcgga
cgcatccccgtagactccatctactctccggtgctgaaggtgagctacaaggtggaggcc
acccgcgtggcgcagcgcaccgacttcgaccgtctcatcatcgacgtcgagaccaagccg
tccatggccccccgcgacgccgtcgcatccgcggggcggaccctggtggagctcttcggc
ctggcccgtgaactcaacgtcaacgccgagggcatcgagatggggccctcgcccgtggac
gaacagatcgccgaatcgctgaacctgcccgtcgaggacctgaacctctcggttcgctcc
tacaactgcctcaaacgcgagggcatccacaccgtcggtgagctcgtcgcccgttccgag
gaggacctcctcgacatccgcaacttcggttccaagtcgatcctcgaggtcaaggtcacc
cttcacaacctgggcctcgcgctgcgcgacgccgccccgggcttcgacccgatccaggcc
atcgaacgctacgaccaggagcacgagggcgaagaggacatcgacgccgaaacggacgac
gactacgccgagaccgagcagtactga
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