Pseudopropionibacterium propionicum: HMPREF9154_2292
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Entry
HMPREF9154_2292 CDS
T02180
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9154_2292 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppc03021
]
HMPREF9154_2292 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_2292 (rpoC)
Enzymes [BR:
ppc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9154_2292 (rpoC)
Transcription machinery [BR:
ppc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9154_2292 (rpoC)
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9154_2292 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cortex-I_coil
Motif
Other DBs
NCBI-ProteinID:
AFN47347
LinkDB
All DBs
Position
complement(2480826..2484776)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNVYDKLCIGLASADQIREWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAHMITHVDEEARHRDLPSLQARHEAYIKQLEKNRDSEIEARLAKLEED
LAQLESEGAKADIKRKVSDGAQKEAGQLRNQYQRRIDRAQAVWERFKSLKVQDLEGDEIL
YRDMKQRYGKYFTGYMGAEAIKRRLETFDLQGEAEKLRETIANGKGQRKTRALKRLKVVA
AFLSGNNNPSGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLDDLNHAQNIKAAKRMVERQR
PIVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSTNNILKPADGRPVTVPSHEMIIGMYWLTMLQEQEKGAGH
AFSSVAEAIMAHDRGDLHVGAPIKLRLNGIIPPAGYADKVRADGSVILETSLGRALFNEA
LPADFPFVNERVGKKQIGQIVNDLAERYPLIDTVRTLDGLKDLGFQWGSRSGVTVSIADV
QTPPSKPEILAAYDARAAKIDTLYERGSVTEDERRQELIELWTDATAELTDAMKDNFSQT
NPIFVMVNSGARGNMTQMRQIAAMRGLVANPKGDIIARPIKSNFREGLSVLEYFISTHGG
RKGQADTALRTADSGYLTRRLVDVSQDVIIREEDCQTERGLVKTIARWTKIVTDEDGKKV
QVAAEPLEEGASVSIVPDVETAVYARTAATDITDAQGNVLVAAGTDLGDAEIERLASVGV
TRVKVRSVLTCEAATGTCAMCYGRSLASGKTVDVGEAVGIVAAQSIGEPGTQLTMRTFHT
GGVAGDDITQGLPRVVELFEARQPKGKAPIAEADGVIRIEDGDRSRKIIIVRDDGGDDLE
YPVARRTRLEFEDANGVRVAIRDGVHVTIGQQLTAGQVDPQDVLRIRGLRKVQEHLVEEV
QRVYRTQGAPIHDKHIEIIIRQMLRRVTVIDSGDTSMMPGELVDRQAYEAANRKALTEGG
RPAEGRPVLMGITKASLATDSWLSAASFQETTKVLTDAAIQGKSDTLVGLKENVILGKLI
PAGTGLERYRNIRVEPTADARSQAYTVSYDPYDYSFSSDLDVPGVPLDDIDFGDIR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgctggacgtgaacgtctacgacaagctctgcatcggattggcgagcgccgaccagatc
cgcgagtggagccacggtgaggtcaagaagcccgagaccatcaactaccgtaccctcaaa
ccggagcgcgacggcctcttctgcgagaagatcttcggccccacccgcgactgggaatgc
tactgcggcaagtacaagcgggtgcgtttcaagggcatcatctgcgaacgctgcggcgtt
gaggtgacccgctccaacgtacgccgcgagcggatgggccacatcgaactggccgcgccc
gtcacccacatctggtacttcaagggcgtcccctcgcgcctcgggtacctgctggacatc
gcgccgaaggatctcgaaaaggtcatctacttcgccgcgcacatgatcacccacgtggac
gaggaggcccgccaccgcgacctcccgagcctccaggcccgccacgaggcctacatcaaa
cagctcgagaagaaccgggactcggagatcgaggcccgcctggccaagctggaggaggac
ctcgcccagctcgagtccgagggcgccaaggccgacatcaaacgcaaggtctccgacggt
gcgcagaaggaggcggggcagctccgcaaccagtaccagcgccggatcgaccgcgcccag
gcggtgtgggagcggttcaagtcgctgaaggtgcaggacctggagggcgacgagatcctc
taccgggacatgaagcagcgctacggcaagtacttcaccggttacatgggcgccgaggcc
atcaagaggcgcctcgagaccttcgacctgcagggtgaggccgagaagctgcgtgagacc
atcgccaacggcaaggggcagcgcaaaacccgcgccctgaagcgcctgaaggtggttgcc
gccttcctcagcggcaacaacaacccctccgggatggtgctcgacgccgttcccgtcatc
ccgccggatctgcgtcccatggtgcagctcgacggcggcaggttcgccacctcggatctc
aacgacctctaccgccgcgtcatcaaccgcaacaaccggctgaagcgtctcctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgctccaggaggccgtcgactcg
ctgttcgacaacggccgccgcggccgccccgtcaccggtccgggcaaccgtccgctgaag
tcgatctcggacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttctgtgatcgtggtcggcccccagctgaaactgcaccag
tgcggcctgccgaaggccatggccctggagctgttcaaacccttcgtgatgaagcgcctg
gacgacctcaaccacgcccagaacatcaaggcggccaagcgcatggtggagcggcagcgt
cccatcgtgtgggacgtgctggaggaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccaaccctgcaccgcctcggcatccaggccttcgagccgcagctgatcgagggcaaa
gcgatccagctgcacccgctcgtctgcgcggccttcaacgccgacttcgacggcgaccag
atggccgttcacctgccgctgtccgccgaggcgcaggccgaggcgcgggtgctgatgctg
tcgacgaacaacatcctcaagccggccgacggccgtcctgtgaccgtccccagccacgaa
atgatcatcggcatgtactggctgacgatgctgcaggaacaggagaagggagccggtcac
gccttctcctcggtggccgaggcgatcatggcccacgaccgcggtgacctgcacgtcggc
gcccccatcaagctgcgcctcaacgggatcatccccccggccgggtacgccgacaaggtg
cgtgcggacgggtcggtcatcctcgagacctcgctcggccgggccctgttcaacgaggcc
ctgcccgcggatttcccgttcgtcaacgagcgggtcggtaagaaacagatcggccagatc
gtcaacgacctcgctgagcgctacccgctgatcgacaccgtgcgcaccctcgacgggttg
aaggacctgggtttccagtggggttcgcgttccggcgtaaccgtttccatcgcggacgtc
cagaccccgccgagcaagccggagatcttggccgcctacgacgccagggccgcgaagatc
gataccctgtacgagcgcggttcggtgacggaggacgaacgccgccaggagctgatcgag
ctgtggaccgacgccaccgcggagctgaccgacgcgatgaaggacaacttctcgcagacc
aacccgatcttcgtgatggtcaactcgggtgcccgcggcaacatgacccagatgcgccag
atcgcggccatgcgaggcctggtggccaacccgaagggtgacatcatcgcccggcccatc
aagtcgaacttccgcgagggcctgtcggtgctggagtacttcatctccacccacggtggc
cggaaggggcaggccgacacggcgctgcggaccgccgactcgggttacctgacccggcgt
ctggtggacgtctcgcaggacgtcatcatccgcgaggaggactgccagaccgaacgcggc
ctggtcaagaccatcgcccgctggaccaagatcgtcacggacgaggacggcaagaaggtc
caggtggcggcggaaccgctggaggagggggcctccgtctccatcgttcccgacgtggag
accgccgtctacgcccgcaccgcggccacggacatcaccgacgcccagggcaacgtgctc
gtcgcggcgggcaccgatctcggtgacgccgagatcgaacggctcgcctccgtcggtgtc
acccgggtcaaggtccgctccgtgctgacctgcgaggccgccaccggtacctgtgccatg
tgctacggccggtcgctggcctccgggaagaccgtggatgtcggcgaagccgtcggtatc
gtcgccgcccagtccatcggcgagcccggcacccagctgacgatgcgcaccttccacacc
ggtggtgtggccggtgacgacatcacgcagggtctgccgcgcgtcgtggagctgttcgag
gcccgccagccgaagggcaaggcccccatcgccgaggccgacggtgtcattcgcatcgag
gacggcgaccgcagccgcaagatcatcatcgtgcgcgacgacggcggcgacgacctcgaa
tacccggtggcgcgtcgcacccggctggagttcgaggacgccaacggggtgcgcgtggca
atccgcgacggggtgcacgtgaccatcggtcagcagctcaccgccggtcaggtggatccg
caggatgtgctgcgcatccggggcctgcgcaaggtccaggagcacctggtcgaggaggtg
cagcgcgtgtaccgcacgcagggcgcccccatccacgacaagcacatcgagatcatcatc
cgccagatgctgcgtcgcgtgaccgtcatcgactcgggcgacacctcgatgatgccgggc
gagctggtggaccgacaggcctacgaggcggcgaaccgcaaggccctgaccgagggcggg
cgtcccgcggaggggcgtccggtgctgatgggcataaccaaggcatccctcgcgacggat
tcgtggctgtcggccgcgtccttccaggagacgacgaaggtgctcaccgatgccgccatc
cagggcaagtccgacactctcgtcggtctgaaggagaacgtgatcctcggcaagctgatc
ccggccggcaccggcttggagcgttaccgcaacatccgggtggagcccaccgcggatgcg
aggtcgcaggcctacaccgtcagctacgacccgtacgactactcgttcagttccgatctc
gacgttcccggcgttccgctggacgacatcgacttcggcgacatccgctga
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integrated database retrieval system
