Pelobacter propionicus: Ppro_2348
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Entry
Ppro_2348 CDS
T00436
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppd
Pelobacter propionicus
Brite
KEGG Orthology (KO) [BR:
ppd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppd03019
]
Ppro_2348
Enzymes [BR:
ppd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Ppro_2348
Messenger RNA biogenesis [BR:
ppd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Ppro_2348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
AAA_16
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABK99955
UniProt:
A1ARI5
LinkDB
All DBs
Position
complement(2538856..2541384)
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AA seq
842 aa
AA seq
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MKPLPIDQILPRLLTTVAENPNVLLHAPPGAGKTTRVPLALLEIIPPQAGRIVMLEPRRL
AAVSAARWMAACLGEEPGGTVGYSIRFDSRVSPKTRIEVVTEGILTRRIQGDPLLEGVAM
VILDEFHERSIQADLGLALCLDLQSQVRDDLKILVMSATLECRALGRLMGDAPLISSQGR
SFPVREIYLEDHSRDRLAPRMAAAIRRVLAETEGDILAFLPGAGEIRSCASLLDQSGLEG
SAVTVHPLYGDLPFARQQAAIQPGRGRRVVLATSIAETSLTIEGVRVVIDSGLSRRQRHD
PASGMNRLVTVRESRASAIQRAGRAGRVSEGICYRLFSRHSFDAMTPHTPPEMLESDLSP
LVLELAAWGVADPAQLAWLDPPPAASLAVARQLLAHLGALDSCGRITPLGRSMARLPLHP
RLSRLLERSRELDLVPLGCALAALLSERDIIRRSPRQGQGKGTPADLHDRLELLRRFRGS
DGFAGDTDRGSLENVERVHRQLERLMGRSSREGGGWSDPDGIGRLLLAAYPDRMAMQREG
EGGRYLLANGRGARLAVPGMAGRSALLVAVSVDGGEGGEGLIHLCQEITEELLLQELGER
RERRERVLWDSREGRVVAMREECLGALVLASSPFVATPEQSLPALVEALRSSGMGLLDRN
ERFLQLQARMELVRRQFPADGWPDCSDGALLDSLEEWLAPALVGVRGARQLGELDLAAIL
LNRLEYRQRASLDELAPTHLVVPSGSRIRLDYCQGETPVLAVKLQELFGLERTPSICRGR
VELLLHLLSPAGRPLQVTRDLKGFWDGSYHQVKKEMKGRYPKHPWPDDPWSAPPTRRAKP
RT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcttcccatcgaccagatccttccccgactcctgaccaccgtagccgaaaac
cccaatgtcctgctgcacgccccaccgggagcgggcaagaccacccgcgtgccgctggcg
ctgctggagatcatccccccccaagcggggaggatcgtcatgctggagccgcgccgcctg
gctgccgtctccgctgcccgctggatggccgcctgcctgggtgaggagccgggagggacg
gtgggatactccatccgcttcgacagccgcgtctccccaaagacccgcatcgaggtggta
accgaaggaatcctgacccgccgcatccagggcgacccgctgctggagggggtggccatg
gtcatcctggacgagttccacgagcggagcatccaggccgacctgggtctggcgctgtgc
cttgacctgcagagccaggtgcgggacgatctgaagatcctggtcatgtccgccaccctg
gagtgccgggcgctgggccggctgatgggcgatgcccccctgatctcctcccaggggcgc
tcgttcccggtgcgggaaatctatctggaggatcattcccgtgaccgcctggccccgcgc
atggcggcggccatccggcgtgtcctggccgagaccgagggggacatcctggcctttctc
cccggtgccggcgaaatccgctcctgtgcctcgcttttggatcagtccgggctggagggg
agcgctgtcaccgtccatcccctgtacggcgacctcccctttgcccgccagcaggcggcc
atccagccggggagggggcgcagggtggtgctggccaccagcatcgccgagaccagcctg
accatcgagggggtgcgggtggtgatcgacagcggcctgtcccgcagacagcgccatgac
ccggccagcggcatgaaccggctggtgacggtgcgcgaatcgcgggcctcggccatccag
cgggcaggccgggccgggcgcgtgagcgaggggatctgctatcgcctcttcagccgccac
agcttcgacgccatgaccccccataccccgccggagatgctggagagcgacctctccccg
ttggtgctggagctggcggcctggggagtggccgatccggcacaactggcctggctcgac
ccgcctccggccgcttccctggcggttgcccgtcagctcctggcgcatctgggggcgctg
gattcctgcgggcggattacccccctggggaggtccatggcccgcctgccgctgcacccc
cgtctgtcccgcctgctggagcgctcccgcgagctggatcttgtgcccctgggctgcgcc
ctggccgccctgctctccgagcgggacatcatcaggcgctccccccggcaggggcagggc
aaggggactcccgccgacctgcacgaccggctggagcttttgcgccgcttccggggcagc
gatggctttgctggcgacacggacaggggcagcctggaaaatgtggagcgggtgcaccgc
cagctggagcggctgatgggacgctcctcccgggaaggcgggggatggagcgacccggac
ggcatcggccggctcttgctggcggcctatcccgaccggatggccatgcagcgggagggt
gagggggggcgctacctgctggccaacggcaggggggcccggctggccgtgccggggatg
gcggggaggagcgccctgctggtggctgtttccgtggatggcggcgaagggggggagggg
ctgatccacctctgtcaggagataacggaggagcttttgctacaggagctgggggagcgc
agggagcggcgggagcgggtgctctgggacagccgggaggggagggtggtggccatgcgg
gaggagtgcctgggagcgttggtgctggcatcctcccccttcgtagccaccccggaacag
agcctgccggcgctcgtggaggcgctgcgctcgtccggtatggggctgctggaccgcaat
gagcgcttcctgcagctccaggcccgcatggagcttgtgcgccgccagttcccggctgat
ggctggcccgactgctcggacggggcgcttttggacagcctggaggagtggttggccccg
gccctggtcggtgtgcgcggcgcccggcagctgggagagcttgacctggcggcaatcctg
ctgaatcgcctggagtaccgccagcgggcctccctggacgagctggctcccacccacctg
gtcgtgcccagcggctcccgcatcaggctggactactgccagggggagacgccggtgctg
gcggtgaagctgcaggagctgttcggtctggagcgtacgccatccatctgccgggggagg
gtggaactgctgctgcacctgctgtcgccggccggccggccgctgcaggtgacccgcgat
ctgaagggtttctgggacggctcctatcatcaggtcaaaaaagagatgaaggggcgctac
cccaagcatccctggccggacgacccctggagcgccccccccacccgcagggccaagccg
agaacatga
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