Pediococcus pentosaceus ATCC 25745: PEPE_0404
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Entry
PEPE_0404 CDS
T00409
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03420
Nucleotide excision repair
ppe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEPE_0404
03430 Mismatch repair
PEPE_0404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_0404
Enzymes [BR:
ppe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEPE_0404
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEPE_0404
MMR (mismatch excision repair)
Other MMR factors
PEPE_0404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
AAA_19
UvrD_C_2
UvrD_C
SLFN-g3_helicase
AAA_30
DEAD
DUF4351
NACHT
DUF7645
Motif
Other DBs
NCBI-ProteinID:
ABJ67500
UniProt:
Q03H22
LinkDB
All DBs
Position
449829..452126
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AA seq
765 aa
AA seq
DB search
MAEGIFEYENRHLDEVLDKVDTAIAKAENDADNAEKDRSAIDKNFYNDVRINTSSYSGMM
DTAISIRQQQQLLSERENSWQHANKRLTTFKEMKKRPYFARIDFHEKGEKKDETIYIGLA
SFSDTADHFLIYDWRAPISSVYYDGKMGDVEYATPDGTQTVDLKLKRQFTIEDGKLISVY
DTDETIGDQMLLNALGSQSDVKMKSIVSTIQREQNKIIRNTAADLLFVQGAAGSGKTAAI
LQRVAFLLYRYRGNLNAGQVIMFSPNQLFNDYVDQVLPELGEQNMIQMTYYQFTRRRIPN
IDVENLQQRFDKKLTDAERKIEQFKGSLQFFKATTKYAKYLGTAGMRFRNIMFQGQPFAT
KEKIKDIYYSFNTTYNLGNRIEGTREALIRQLNQKVGSELRTKWVEEAVQNLSQEELHNL
FKNEPREFKDNDEEFKFLARQIVMKELKPVRNAIMRNRFLSINAQYVQMLRSFPKWYDLK
KVGVTEAEWDNHVDKVVNGLKEHQLTMVDTTAYLYLYDLITGKKGDRSMRYAFIDEIQDY
NAFQLAYIRFNFPRAKFTLLGDLNQSIYANETSDTLLAELSTMFDPEKTEVVQLSKSYRS
TQQITDFTKEILVKGEAIESFNRAGELPTVSINSSHQGMVEAVIEQLHRDRQDHETSAII
GRSYAECEQIADELKAAGEQVTLIRTENQRLVEGTIVVPSFLAKGLEFDSVIVWNTSAKI
YQTNRDEQLLYTICSRAMHRLLIVAENDLSPLITKIPENLYIKKA
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
ttggcagagggaatttttgaatacgaaaatagacatttagatgaagttttagataaggtg
gatactgcaattgccaaagcagaaaacgacgccgataatgccgaaaaagatcgtagtgcg
attgataagaatttttacaacgatgttcgaattaacacttccagttattcaggtatgatg
gatactgcaatttcaatccgtcaacaacagcaattattatctgaacgcgaaaatagttgg
caacacgctaataaacgtttaaccacgtttaaagaaatgaaaaagcggccctattttgca
cgaattgattttcacgaaaaaggtgaaaagaaggatgaaaccatctatattggtttagct
tcattttcggacacggccgatcattttttgatttatgattggcgggctcccatttctagt
gtttactatgacggaaaaatgggcgatgtggaatatgcaacgccagatggcacgcaaacg
gtagacttgaagttaaaacggcaatttactattgaagatggtaaattgatttcagtttac
gatacggacgaaactatcggagatcaaatgctactaaacgcgttgggttctcaatccgat
gttaagatgaaaagtattgtttcaaccatccaaagagaacagaataaaattattcgaaat
accgcagccgatttactattcgttcaaggtgcagctggatcgggaaagaccgctgcgatt
ttacagcgggtcgctttcttgctttaccgttaccgcggaaatttaaatgctggacaagtc
atcatgttttcacctaatcaattgtttaatgattatgttgatcaagttttacccgaactg
ggcgaacaaaacatgattcagatgacctattatcaatttactagacgacggattccaaac
atcgacgttgaaaacttgcaacaacgttttgataagaagctcacggatgcggaacgtaaa
atcgaacaattcaaaggaagcttgcaatttttcaaagctactactaaatatgcgaaatat
cttgggacggcaggtatgcgattccgcaatatcatgttccaaggtcaaccgtttgctact
aaggaaaaaattaaagacatctattattcatttaatactacctataatttgggtaaccga
attgaaggaactcgggaagccttgatccgccaattgaaccaaaaagtaggtagtgaattg
agaactaagtgggtggaagaagcggtccaaaaccttagccaagaagaattacacaaccta
tttaaaaacgagccccgtgaatttaaggataatgatgaagaatttaaattccttgctcgt
caaatcgtaatgaaagaacttaaaccggttcgaaatgcgattatgcgtaatcgcttctta
agcattaatgcccaatatgtccaaatgctacgttcgttccccaaatggtacgatttaaag
aaagttggggtaacagaagcagaatgggataaccatgtggataaagtggtaaatggactt
aaggagcatcagttaaccatggtagatacaaccgcttatttatacttgtatgatttaatt
acgggtaaaaaaggtgatcgttccatgcgttatgcatttattgatgaaatccaagattat
aatgctttccaactagcttatattcggttcaattttcctcgagcaaaattcacactttta
ggagatttaaatcaatcaatttacgccaatgaaactagtgatactttattagcagagtta
tcaacaatgtttgatccagaaaagacggaagtagttcaactatctaagtcttatcgttca
acacaacaaattacagactttactaaggaaatcttggtcaaaggtgaagcaattgaatcc
tttaatcgcgcgggtgaattaccaacggtttcaattaatagtagtcatcaaggaatggtt
gaggcggtgatcgaacagcttcatcgcgatcgccaagatcatgagactagcgccattatt
gggcgtagctatgctgaatgtgaacaaatcgcggatgaattaaaagcagctggcgagcaa
gtaacgctaatccgaactgaaaatcagcgtttggtggaaggtaccatcgttgttccatct
ttcttagccaagggattggaatttgattcagtaatcgtgtggaatacttcagcgaagatt
tatcaaactaatcgggatgaacagttattatatacaatttgttcacgggcaatgcatcga
ctcttaatcgttgctgagaatgatcttagtccgttaattactaagattcctgaaaattta
tatattaaaaaagcttaa
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