Pediococcus pentosaceus ATCC 25745: PEPE_0464
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Entry
PEPE_0464 CDS
T00409
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPE_0464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppe03019
]
PEPE_0464
03016 Transfer RNA biogenesis [BR:
ppe03016
]
PEPE_0464
Enzymes [BR:
ppe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PEPE_0464
Messenger RNA biogenesis [BR:
ppe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PEPE_0464
Transfer RNA biogenesis [BR:
ppe03016
]
Prokaryotic type
tRNA degradation factors
PEPE_0464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABJ67559
UniProt:
Q03GW3
LinkDB
All DBs
Position
517279..519624
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AA seq
781 aa
AA seq
DB search
MEINKLQALIINYLQQRPTQKLTAEELFKGLNLEGASVFNTLVKELALMERSKKVEITED
GKFKIARPKNQLLVHGVFHANDRGFGFVSVEEDEIPDIYISEDHTAYALNMDEVDVKITR
PSKKGDDRGPEGIVKKITSRHFTQAVGVFEFAPEPQKNVLGHINLKDKKMSSYQFDVLEG
GIQPTDGSVITAQVTQYPKPNSPKLIAGVAEKTVGHKDDPGVDILEVVYQHELPTEFPDD
VKAEIASIPDYVTDAEKKGRVDLTNEVVVTIDGDDSKDFDDAVGLKKLDNGNYRLLVNIA
DVSHYVKEGSPLDKEAYRRSTSVYLTDRVIPMLPRKLSNGICSLNPNVERLSMTCEMEIT
PEGDVVNHKIYPSVIESDARMTYNDVNKILESKDEKTMARYEKLVPMFEMMGELHKILLK
KRKQRGAIEFSDKEAQIIVDETGHPIDIKLRTRGTSERMIESFMLAANETVAEHYYKAHV
PFLYRIHETPDSERMLTFFEFLSVFGHVVKGSTKDLKPKMLQSVLKKIAGTPEEAMISVM
MLRSMRQAKYDAQSLGHFGLAAEYYTHFTSPIRRYPDLFVHRLIRHYAENGTGEAAQAKY
VESIPEIADHTSKLERRAIDTERDVDGMKKAEFMADHVGEEFHAVVSSVMKFGLFVELEN
TVEGLIHISTMKDDYYEYVEKQMALVGRNTHRTFQIGQEVEIKLMRVDKDQSEVDFELLH
PEKTPKSDIQLPPRQQFNRGPRRNGQKPSGKNNNKSGNRNGKPFYKDKTVKKFSKNTSHK
K
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaacaaattacaagctttaattattaattatctgcaacaacgaccaacccaa
aagttaactgctgaggaactttttaagggtttaaatttagaaggggccagtgtgtttaac
accttagttaaggaattggcattaatggaacgttctaaaaaagttgaaataacggaagat
ggcaaatttaaaattgctcgtcctaaaaatcaattattagttcatggtgtgttccatgct
aatgatcgtggtttcggatttgtttcagtagaagaggatgaaattcctgacatttatatt
agtgaagatcatacagcgtatgctttaaatatggatgaagttgatgtaaaaattactcgt
ccatctaagaagggtgacgatcgcggaccagaaggaattgttaagaagattacaagtcgc
cactttacccaagcggtgggggtttttgaatttgctcctgaaccacagaagaatgtttta
ggtcatatcaatttgaaagacaagaaaatgtcttcatatcaattcgatgttctagaaggc
ggaattcaaccaactgacggttcagtgatcacggcccaagttacgcaatatcctaagcct
aattctcctaagttaattgccggggttgctgaaaagacggttggtcataaggatgatcca
ggagtggacatcttagaagtggtttatcaacatgagttaccaactgaatttccagatgat
gtcaaagcagagattgcttcgattccagactatgtaacagatgcagagaaaaaaggacgc
gttgatttaactaatgaagtagtggtcacaatcgatggggatgattccaaagattttgat
gatgctgtaggtcttaaaaaactagataatggaaattaccgtttattagttaacattgcg
gatgtttctcactatgttaaagaaggttctcctttagataaagaagcatatcgtcgaagt
acaagtgtttacttgactgaccgagtaattccaatgttgccacgtaagctttctaacgga
atttgttcattaaaccctaatgttgaacggctttcgatgacttgtgaaatggaaattacg
cctgaaggagacgtagttaaccataagatttacccaagtgtaattgaatcagatgctcga
atgacatataacgatgttaataagattttggaatctaaagacgaaaaaactatggcacgt
tatgaaaaattagtgcctatgtttgaaatgatgggcgaacttcacaaaatcttgcttaag
aagcgtaagcaacgtggagcaattgaatttagcgataaagaagcccaaatcatcgttgat
gaaaccggacatccaattgacattaaattacggacgcgtgggacttcagaacgtatgatt
gaatcattcatgttggcagctaatgaaacggttgctgagcactactataaggctcatgtg
ccattcttatatcgtattcatgaaactcccgatagcgaaagaatgttaaccttctttgaa
ttcctatctgtatttggacacgtagttaaaggaagcaccaaggatctgaagcctaagatg
ctgcaaagcgtgcttaagaagattgctgggactccagaagaagcaatgatttcagtaatg
atgcttcgtagtatgcgccaagctaagtatgatgctcaatcattaggtcattttggattg
gctgctgagtattatacgcatttcacttcaccaattcgccgttatccggacttatttgtg
caccgcttaattcgtcattatgccgaaaatggtactggtgaagcagcacaagcgaaatat
gttgaaagcattccagaaattgccgatcatacttccaagttagaacgtcgagcaatcgac
acagaacgtgatgttgatggaatgaagaaggctgaatttatggctgaccatgtgggagaa
gaattccatgcggtagttagttcagtaatgaagtttggtttattcgttgaattggaaaat
acggttgaaggactaattcatattagtaccatgaaggatgactactatgaatatgttgaa
aaacagatggccttggtcggacggaatacccaccgtacattccaaattggtcaagaagtt
gagattaaattaatgcgagtggataaggatcaatctgaagttgattttgaattattgcat
ccagaaaaaacacctaagagtgatattcaacttccaccgcgtcaacaatttaaccgtggt
ccgcgtcgtaacggtcaaaagcctagcggaaagaacaacaataaatcaggaaatcgaaac
ggaaaaccattttacaaagataaaacggtcaagaagttttctaaaaatacttctcataag
aaataa
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