Pediococcus pentosaceus ATCC 25745: PEPE_0965
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Entry
PEPE_0965 CDS
T00409
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppe03032
]
PEPE_0965
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_0965
Enzymes [BR:
ppe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PEPE_0965
DNA replication proteins [BR:
ppe03032
]
Prokaryotic type
DNA Topoisomerases
PEPE_0965
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PEPE_0965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Auto_anti-p27
Toprim_4
DUF2996
DNA_ligase_ZBD
SseB_C
Motif
Other DBs
NCBI-ProteinID:
ABJ68021
UniProt:
Q03FK1
LinkDB
All DBs
Position
complement(967864..969936)
Genome browser
AA seq
690 aa
AA seq
DB search
MPAAKKNLVIVESPSKAKTIEKYLGRTYKVVASLGHIRDLPKSKMGVDLENDYEPHYISI
RGKGDTIKNLRKEAKKAKKVYLASDPDREGEAIAWHLSYLLGLDPKDQNRVVFNEITKDA
VKNAFKTPRSIDMTLVDAQQARRILDRLVGYSISPLLWQKVKKGLSAGRVQSIALSLIIK
REQEIKAFEPEEYWSIDSEFKKGRSKFKAAFYGVNNKKMKLPNNDKVQEVLKKIDPKADF
DITEVKRRERKRYPAPAFTTSSMQQEANKTLNFRTRKTMMAAQQLYEGINIGKEGTVGLI
TYMRTDSTRISEVAKHETSLFIHDEFGAEYAATKPRKGKMPEGAQDAHEAIRPSSVLRTP
ESIKEYLNKDQFRLYNLIWSRFVASQMTPEVSDTMTVKIEQNGVQFRANGSKTKFEGFTK
VYKTNKDKDNVLPNLEEGDQVQLVTNNPNQHFTQPPARYSEATLIKALEENGVGRPSTYA
PTLDTIQRRYYVKLESKHFEPTELGEIVNEIIYDFFPDIVNIDFTAGLEKDLDSIEEDKE
DWVKVVDRYYKPFAKELAKAQEQIEKVQIKDELAGFNCEICGSPMVVKMGRYGKFFACSR
FPDCRNTQAIVKEIGVTCPKCHQGQIIERKSKRGRLFYGCSRYPDCDFVSWDKPIARECP
VCHSYLIEKKIKGGKQIVCPNGDYEETPQK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagcgaaaaaaaaccttgtgattgtggaatcaccatccaaggctaaaaccatt
gaaaaatatttaggccgtacctataaagtagttgcgagtcttggacatattcgtgatcta
ccaaagagtaagatgggcgtggatctggaaaatgattacgaaccccattacatctctatt
cgtggtaagggcgataccattaaaaatttacgtaaagaagctaaaaaagctaaaaaagtt
tatctggcatctgatcccgatcgggaaggagaagccattgcgtggcacctttcatatcta
ttagggttggatcccaaagatcaaaatcgagtggtttttaatgaaattactaaagatgcc
gttaaaaatgcgttcaaaactccgcgtagcattgatatgacgctcgttgatgctcaacaa
gctcgtcggattttggatcgtttagtcgggtattcgatttctccattactatggcaaaaa
gttaaaaaaggccttagtgctggtcgagttcaatcaattgccttaagtttaattattaaa
cgtgaacaagaaatcaaggcgtttgaacctgaagaatattggtcaattgattctgaattt
aaaaaaggacgctctaaatttaaggctgccttttatggcgtgaataataaaaagatgaag
ctgcctaataatgataaggttcaggaagtattaaagaaaatcgaccctaaggctgatttt
gatattacggaagttaaacgccgagaacgcaaacgttatccagctccagcttttacaact
agttctatgcaacaagaagccaacaagacgttgaatttcagaactcgtaaaacgatgatg
gctgcccaacaactttatgaaggaattaacattggtaaagaaggcactgtcggtttgatt
acctatatgcgaaccgactcgactcgtatttctgaggttgctaagcacgaaacttcatta
tttattcatgatgagtttggcgcagaatatgctgctactaagcctcggaagggtaaaatg
cccgagggtgctcaggatgcccatgaagcaatccgcccttcgtccgtattgcggactcct
gaaagtattaaagaataccttaataaagatcaatttagactttataatttaatttggtcc
cgttttgttgctagtcaaatgacaccagaagtttcggataccatgacggttaagattgaa
caaaatggagttcaattccgagctaacggatcaaagaccaaatttgaaggtttcacaaaa
gtttacaagaccaataaggacaaagataacgttcttccaaatctagaagagggcgaccaa
gtccaactggttaccaacaacccgaaccaacatttcactcagccaccagctcgctatagt
gaagctactttaattaaagctttggaagaaaatggggtaggtcgtccttctacgtacgct
ccaaccttagacacgattcaaaggcgttactatgttaagttagagtctaaacattttgaa
cctactgaactgggtgaaatcgtcaatgaaattatttatgacttcttcccagatatcgtt
aatatcgattttacggctggcttggaaaaagacttggattcgattgaagaagacaaggaa
gactgggtgaaagtcgttgaccgttattacaaaccttttgctaaggaactagccaaagca
caggaacaaatcgaaaaagttcagattaaagacgaactagctggttttaattgtgaaatc
tgcggttcacccatggtagtcaaaatgggacgttacggtaagttcttcgcttgcagccgt
ttcccagactgtcgtaatacccaagcaattgttaaagaaattggcgtaacctgtcctaag
tgtcatcagggacaaattattgaacgtaaatctaaacgcggtcgattgttctatggttgc
tctaggtatccggactgtgactttgtgtcatgggataaaccaattgctcgtgaatgtcct
gtttgtcatagctacttgattgaaaagaaaattaaaggcggcaaacaaattgtttgtcca
aatggtgactacgaagaaacacctcaaaaatag
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