Pediococcus pentosaceus ATCC 25745: PEPE_1082
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Entry
PEPE_1082 CDS
T00409
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPE_1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppe03019
]
PEPE_1082
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_1082
Enzymes [BR:
ppe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEPE_1082
Messenger RNA biogenesis [BR:
ppe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEPE_1082
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEPE_1082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
Helicase_C_2
Myb_DNA-bind_6
VIT1
Motif
Other DBs
NCBI-ProteinID:
ABJ68137
UniProt:
Q03F85
LinkDB
All DBs
Position
complement(1078457..1079881)
Genome browser
AA seq
474 aa
AA seq
DB search
MVTDKKIYQVLHEKFNFTEFKTGQLEILHKLFDHHHTLAILPTGAGKTLIYQMYGFLNEG
SVIVVSPLLSLIKDQINRLRLSGERRIAEITSQIDFMEQKQILNNLERYKFIFISPEGLQ
RPDVQAAMQRIEIDLFVVDEAHCIVQWGKSFRPDYLKIGRIRTQLNNPLTLMLTATAGKT
TREEIVRYLNLKKGEVEEYISSVDRSNIYLDFLEVESRSDKDEKLLDLLDELPGAGIIYF
SSRKVASQVSEMINNNLTLTSAPYHAGMTDYDRFQVQKQFQQDQVNVICATSAFGMGIDK
ANIRYVIHYHLPGDIESYVQEIGRAGRDGQQSIAIMLYAAGDEVIPSILNDIEIPSEAIL
TENLERSGIDEEQQELIKYYQENGLTPHELTELFKRQQLQNEQQILRMLKLIRTENCHRQ
YLLQYFDEGFKKHHDLCCGSINTFEELKLEANLTTKKMQIEPWKSRLNKIFAGI
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggtaacagataaaaaaatttatcaagtcttacatgagaaatttaattttactgagttt
aaaacgggtcagttagaaattttacataaactttttgaccatcaccatacattggcgatt
ttaccaacaggagctggaaaaaccttaatttatcaaatgtatggttttttaaatgagggc
tccgttattgtggtttcgcctttattatccttgattaaagaccaaatcaaccggttaaga
ttaagtggggaacgtcgtatagcagagataacttctcaaatagattttatggagcaaaag
caaatccttaacaatttagaaagatataaatttatttttatatcacctgagggattgcag
cgacctgatgttcaagcagcgatgcaacgaatagagatcgacttatttgtagttgatgaa
gctcattgtatcgttcaatgggggaagtcgtttcgtccagactacttaaaaattggtcgg
atacgaacgcaattaaacaaccccctaacattgatgttaacggccacagctggaaaaaca
acccgtgaagaaatcgttaggtaccttaatttgaaaaaaggtgaggttgaagaatatatt
agttctgtcgatcgctccaatatctatcttgattttttagaagtcgaaagtagaagtgac
aaagatgaaaaacttttagatttacttgatgagttaccaggggcaggaataatctacttt
tcaagtcgcaaagttgctagccaagttagcgaaatgattaataataatcttactcttact
tcggctccatatcatgcagggatgacagactatgaccgttttcaagttcaaaaacagttt
caacaagatcaagtcaatgtgatttgtgctaccagtgcgtttggaatgggtattgataaa
gctaatatcagatatgtaattcactatcatttgcccggagacattgaaagttatgtccaa
gagatcggtcgtgctggtcgcgatggtcaacagagtattgctattatgttgtatgcggct
ggcgacgaggtaattccttcaattttaaatgatattgaaattccttctgaagcaatcctt
actgaaaatcttgaacgcagtggtatagatgaagagcagcaagaattaattaaatattat
caagaaaatgggctaacccctcacgaattaacagagttatttaaaagacaacaattacaa
aatgaacagcaaatcttaagaatgttaaaactcattcgaacggagaattgtcatcgtcaa
tatttgctacaatattttgatgagggcttcaaaaaacaccatgatttatgttgtggttca
atcaatactttcgaagaattaaagttagaagctaatttaacaactaaaaaaatgcaaatt
gaaccttggaaatcaagattaaataaaatttttgcaggaatatag
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