Pediococcus pentosaceus ATCC 25745: PEPE_1130
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Entry
PEPE_1130 CDS
T00409
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03410
Base excision repair
ppe03430
Mismatch repair
ppe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PEPE_1130
03430 Mismatch repair
PEPE_1130
03440 Homologous recombination
PEPE_1130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_1130
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PEPE_1130
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PEPE_1130
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PEPE_1130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABJ68184
UniProt:
Q03F38
LinkDB
All DBs
Position
complement(1128443..1130764)
Genome browser
AA seq
773 aa
AA seq
DB search
MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDP
MLLHDMQKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFK
DGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEA
YAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF
LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELL
TTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVL
GIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPIREKCVGFGGHHMAI
GVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM
NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPIS
LVGTINTNEWRGNVSVQFMTDDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLI
QSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIKATQPQRIITYFFHNVDFYAS
GMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF
INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataacagatttaattggcaagttagcaagttagatgatgttgatatcgatcaa
ctggcatcggaaaccaaacttagccagacgatggttaaaatcatggtcgctagaggtttt
aaaacaggcgaggatattctcagttttattgatgaggatatgtcgattgtacatgatccg
atgctactgcacgatatgcaaaaagcccttgaccgaatttttgtggcgattgaaagcaac
gaaaaaattcttgtatacggtgattatgatgcagatggggttacaagtacgaccattatg
tatgaaacgttagatcagttaggggctaacgtgcaatactttgttccagaccgttttaag
gatggttatggtcctaatttgaagaagtaccaacacttcattaatgatgaaggggttcag
ttaatcattaccgtggataatggagttgccggaaatgaagcaatcaaatttgctgaagat
cagggtacgaatgttattgtcacggatcatcatgaaataccagaagtattaccggaggca
tatgcaattatccatccacgtcacccagagggagcctatccatttggtgatttgtctgga
gtcggggtagcttttaaggtggcaacagctttacttgaagaaattcccgaagaattcctt
gacttgtatgcaattggaacgaccgctgatttggtttcaatgaccgatgaaaatcgtttt
ttggtaaagatgggattagaaatgatacccaacacccagagaattggcttacagaagtta
atcgaaatatcaggtgttgatgtaagtcatttcgacgagcaagacattggttttactgtg
gctccgagaattaatgctgttggtagattagaaaatgccagccgagcagtagaactatta
acaacttttgatgaagaagaagccacaacaattgcacaagagattaataagattaattcg
aagcgtcagggattagttagtgatatttacactgaagctgaagaaattgcccttgatgat
gagcatgctagccgccaaacgctagttattgctggacacgactggcatcaaggagtcttg
gggattgttgctagtcgaattgtcgaacgaactaataaaccgacgattgttcttagtgat
caaggtggtaatggaatttataaggggtctggacgtagtgttgcagctctaaatttattt
gaagctattaatcctatccgagaaaagtgtgttgggtttggtggacatcatatggctatt
ggagttaccgtagaggctgaccagcttgcaactctaactgatcaattagaaaaggcggct
caattagttaatttagattttaagcaacagccgcaattacaaattgatttaaaagtaaac
attgaagaattaactgaaaagttagtttcagaaatgaaaattttagggccgtttgggatg
aataacccagtacctaagtttgaacttgaagacgttcgtgttaaagaagcaaaggcaatt
ggtaaagatggggcacatttaaagttcacgcttgatgatggtaatcaaaatatcaatgct
attgcgtttaaacggggtgagttagctgatgtcttaaataatgttgcaaatcccattagt
ttggtgggaaccatcaatactaacgagtggcgtggtaatgtttcggttcaatttatgacg
gatgatatcaagatcgatggtttgcaagttattgatcaacgaacctcaaatttgaataaa
aacttatttaagagtgacatgcaatatgtcttttttaaccaaaagttaatggatttgatt
caaagtcaaaatcttaatcgtaaattctattattacagttcgtcagcaattgagaaaaat
gacacgattgtattagtagattgtcctgataatctagccaaaatggccgaacttatcaag
gctacgcagccgcaaagaatcattacttatttctttcataacgtcgatttctacgctagt
ggcatgcccagtcggattgaatttaagcagatgtttggtattgttaaaactcaaaaatta
actaaaacagatatcatgcaacttggaccaaaattaaaaatagatcaagagaagatcaac
ttcatgataaaagtgttttttgagttgaattttgttaaaatagaaaacggacttcttttc
atcaatgctgaagcagaacagcaccaacttactgaggcaccggcgtataagaagcgtgaa
gaattaattcaaactcaggaaaaattactctatagtagtggtgatgaactatcagctata
gttgaaagactgatgaatgttgataacaaaggagtgtcgtaa
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