Pediococcus pentosaceus ATCC 25745: PEPE_1169
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Entry
PEPE_1169 CDS
T00409
Name
(GenBank) ATP-dependent DNA helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PEPE_1169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_1169
Enzymes [BR:
ppe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PEPE_1169
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PEPE_1169
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
nSTAND3
HHH_5
AAA
AAA_23
AAA_28
AAA_5
KTI12
T2SSE
TsaE
PG_binding_4
AAA_29
cobW
AAA_14
NPHP3_N
AAA_7
FtsK_SpoIIIE
SLFN-g3_helicase
Peptidase_S21
AAA_16
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ABJ68223
UniProt:
Q03EZ9
LinkDB
All DBs
Position
complement(1168805..1171249)
Genome browser
AA seq
814 aa
AA seq
DB search
MAFEKMNLFGDADPKKQSQNKMVELIGEISAVFFESPDSLFKVLLVTVEEDDFDWSEEQI
VVTGNIGDVQEGQKYQFNGKLIAHPKYGMQIQANQYRAFMPNTEDGVVTYLSGSQFKGIG
TKTAEKIVEALGSDALNEIKKDPGVLNGLNLKEKQIDMIVSVLDQSNGLEDILIKLSDMG
ITGKIASSIVNKYHEDAINIIEENPYRLVEDIENIGFKRADAIAASLNIKPDFEKRIQAG
ILEAIKTWCNATGDTYILADMLLQEARKLLGTAVNAEAIADQVLQLGKDGKVVGEDGQIY
LKWLYNAEVAISYNVKRMVGESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPL
TIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKFPIQLAAPTGRAAKRLSQVTN
VPAKTIHRLLGLNGNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLV
GDKDQLPSVGPGQIFNDLIKSGKIPTISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKN
KKDKSFFLANANQIVDAIDQIAQKAVDKGISKNDIQVLAPMYRGSAGVDEINRHLQKVLN
PPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIGEITGIVMEKQGKGRAHLVVD
YDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRAS
NSIILLGEPDAYQRAVSNESSNRNTSLERRINPQVEVLAEKVNQIQVSEPVDQEQSTSEP
VEVEQPKYLTTSMVQKEQVDPMIGMEGVTPYDFI
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgagaaaatgaatttatttggcgatgctgacccaaaaaagcagtctcaaaat
aagatggtcgaactgattggtgaaattagtgcggtcttttttgagagcccagatagttta
tttaaagtgctcctggttactgtagaagaagatgattttgactggtccgaagagcagatt
gtcgttactggaaatattggtgacgtacaagaaggacagaagtatcaatttaatggaaaa
ctaattgcacatcctaagtatggtatgcaaattcaagctaatcaatatcgagcgtttatg
ccaaatacagaagatggtgttgttacatatttgtcgggatcacaattcaaaggaattgga
acgaaaaccgctgaaaaaattgttgaagctttgggatcggatgcacttaatgaaattaag
aaagaccctggagttttaaacggtctaaaccttaaagaaaagcaaattgatatgattgta
tcggttttggaccagtccaatggattagaggatatccttataaagctcagtgatatgggg
attacaggaaaaattgctagtagtatcgtaaataaataccatgaggatgcaattaacatc
attgaagagaatccctaccgattggtcgaggatatcgaaaatattggttttaaacgagct
gatgctatcgctgctagcttaaatattaaaccggattttgaaaaacgaattcaagcagga
attttagaagcaattaaaacttggtgtaatgccacaggtgatacttatattttggcagat
atgctactccaagaagcccgaaagcttttaggtacggctgtaaatgctgaagctattgca
gatcaagttttacagctaggtaaagatggaaaagtcgtaggtgaggacggccaaatttat
ctgaaatggttatataatgctgaggtcgctattagttataacgttaaacgcatggtcggt
gaatcgaattcgaacgttaaaggtattaagcgggcaatcaaagccgctgaaaagaatcta
aatttaaagtatgatgatacgcagaatgcagcgattgaacttgcactttcacatcctctg
acaattattactggtggcccagggacagggaagactacaattgttaaggggttaattaat
agctttgcagaattaaatgatatttcgttggatattaacgaatatacggaaagtaaattc
cccattcagttagcagccccaactggtcgagcagctaaaagattaagccaagttacgaat
gtaccagctaaaactattcatcgtttgctagggttaaatggtaatgacgatctccagaat
gatgaaataaagcagcttgaaggcgatttgttagttatcgacgagatgtctatggttgat
actggattatttagtacgttggttaatgccattaatccagatatgcaagtggtattggta
ggagataaagaccaattaccatcagttggaccaggacaaatatttaatgatttaattaaa
agtggtaaaattccaaccatttcgttaacaaaaatttatcgtcaagaacaagattcatcg
attattcagttagcccacgatatccaaaaaggggtattacctgaagattttaccaaaaat
aaaaaagataaatccttctttctagccaacgctaatcaaattgttgacgcaatagatcaa
atcgcgcaaaaagctgtagataaagggatttctaagaatgatattcaagttttagcaccg
atgtatcgaggtagtgcaggagtagatgaaattaaccgacatctacaaaaagttttaaat
ccacctcaaacggataaaccgaagaaaatcgaatctggcaatcaaacttttagaattggt
gataaagttttgcaattggttaattcacctgaaaataatatctttaatggtgatattggc
gaaattaccggaatcgttatggaaaagcaaggcaaaggcagagctcatctagtcgttgac
tatgatggaaatgaggttacgtatgctaaaactgaccttggacaattgaccttggcatat
tgtatttcgattcataaatcacaaggtagtgaatttccggtggtgattatgcctatggtg
catcaatactatcgaatgttacaacgcaacctcttatatacagggctaactcgtgcgtcc
aattcgattattttgttgggtgaacctgatgcttaccaaagagcggtaagcaatgaatca
tctaatcgaaataccagtttagaacgtcgaattaatccgcaagtagaagttttagctgaa
aaagtaaaccaaatacaagtatcagaaccagttgatcaagagcaatcaacgtcagagcca
gtggaagtagagcaaccaaagtatttaactacgtcgatggttcaaaaagaacaggtagac
ccaatgattggaatggaaggggtcacaccgtatgattttatttag
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