Pediococcus pentosaceus ATCC 25745: PEPE_1275
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Entry
PEPE_1275 CDS
T00409
Name
(GenBank) Predicted membrane-associated HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPE_1275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppe03019
]
PEPE_1275
Messenger RNA biogenesis [BR:
ppe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PEPE_1275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Propep_M14
UPF0154
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABJ68316
UniProt:
Q03EQ6
LinkDB
All DBs
Position
complement(1264690..1266249)
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AA seq
519 aa
AA seq
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MIILYIILAIIAIVVGYCAGFFMHKRLIEKQTANASNSADVIVENARKQAETERREKLLE
AKDESHRYRAKVEKELKERRAELQKQEDRLLQREDSLDRKDNSFEKRENSLERKEQKLAL
DQKHIDEQQQKASSLVEERQQELERVSNLTQEDAKNLIISETEAKLEKERALIIKEGLED
AEAEADQTARKLIAEAIQRSAADMASETTITVVSLPNDDMKGRIIGREGRNIRNFQNVTG
VDLIIDDTPEAVVLSSFDPIRREIARIALDKLIQDGRIHPARIEEMVEKAKKEMDDNIRK
TGEQAVFDLGIHSMNPELIKLIGQLKYRTSYGQNVLNHSIEVANLAGVLAAELGEDVTVA
KRAGLLHDIGKAVQHETDTSHAQLGVELAKKYKESATVINAIAAHHDGVEAQHVISVLVA
AANSISAARPGARSDTLQSYIHRLEKLEQISNNFDGVKKSYAIQAGREVRVIVKPNKIND
LKAVMLTHNIRKAIEKELEYAGKVKVTVVREVRAVDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgataattttatatattatcctcgcaatcatcgctatagttgttggctattgtgcagga
ttctttatgcacaaacggctcattgaaaagcaaactgcaaatgccagtaattcggcagat
gtaattgttgaaaatgcaagaaagcaagcagaaacggaacgtcgtgaaaagcttctagaa
gccaaggacgagagtcatcgctatcgggcgaaggtggaaaaagaattaaaagagcgacgg
gctgagcttcaaaagcaagaagatcgtttacttcagagagaagattctcttgatcgtaag
gataattccttcgaaaagagagagaatagcctagaacgaaaagaacagaaacttgctcta
gaccaaaagcatatcgatgagcaacaacaaaaagcatcatcactcgttgaagaacgacaa
caagaacttgagcgagtttccaatctaactcaagaagatgcaaagaacttaattatttcc
gaaacagaagctaagttggaaaaggaaagagcgttaataatcaaggaaggtcttgaagat
gctgaagcagaagcagatcagactgccaggaaacttatcgctgaagctattcaacgcagt
gcggctgatatggcatctgaaaccacaattacggtggtttcgttgcccaatgatgatatg
aagggtagaattatcggacgtgaaggccgtaatattcgaaacttccaaaatgtcacggga
gtagacttgatcattgatgacactcctgaagccgtggtattgagtagctttgacccaatt
cgtcgcgaaattgctcgaattgccttagacaaactgattcaagatggtcggattcatcct
gctcgaattgaggaaatggttgaaaaagctaaaaaagaaatggatgacaatattcgtaag
actggtgaacaagcggtctttgatttgggaattcattctatgaacccggaactaattaag
ttaattggacaattaaaatatcggacgagttatggtcaaaatgttttaaaccattcaatt
gaagttgctaatttagcaggtgttttagctgctgaattaggtgaagatgttactgtagca
aaacgcgcaggattattacacgatattggtaaagcagtacaacatgaaactgatacttcg
cacgctcaacttggagttgagttggctaagaagtataaagaaagtgcaacggtaattaat
gcaattgccgctcatcacgatggtgttgaagcacagcatgttatctccgtattggttgct
gcagctaactcgatttcagcagcgcgaccaggggcacggagtgatacactacaaagttat
attcatcgtttagaaaaactagaacagatttctaataattttgatggagtaaagaaaagt
tacgcaattcaagctggacgtgaagttcgcgttatcgttaaacctaataagattaacgat
ttgaaggcggttatgttgacccacaatattcgtaaggcgattgaaaaagagctcgaatat
gctggaaaagttaaagtaacggttgtacgtgaagttcgagcagttgattatgctaagtaa
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