Polaribacter pectinis: H9W90_00685
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Entry
H9W90_00685 CDS
T08187
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppec
Polaribacter pectinis
Pathway
ppec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9W90_00685 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppec03021
]
H9W90_00685 (rho)
03019 Messenger RNA biogenesis [BR:
ppec03019
]
H9W90_00685 (rho)
Transcription machinery [BR:
ppec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
H9W90_00685 (rho)
Messenger RNA biogenesis [BR:
ppec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9W90_00685 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
Mor
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNM85673
UniProt:
A0A7G9LAM4
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All DBs
Position
complement(135161..136849)
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AA seq
562 aa
AA seq
DB search
MFEISELKAKTLADLQVIAKSIGLSKTSQLKKLDLVYQILDTQAANPSKAAVATSTTEEK
PKTVDKPKRKRVSKTPQATVTANEEKETPEEKTVERPKKTAPNHPKPTQKKPIPRKVVNK
ESKDDVKTEATPSIKNDKQEQKPANQQNKPQHKNPNQQNTKSKNNNQNRDKKPTVSRGNK
SNNRYRDPDFEFDGIIESEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKT
GDTVRGNVRPPKEGEKYFPLIRVSKINGLNPNIVRDRVSFEHLTPLFPQEKFNLAEKGSS
LSTRIIDLFSPIGKGQRGMIVAQPKTGKTMLLKDVAKAIATNHPEVYQIVLLIDERPEEV
TDMQRSVRGEVVASTFDEPADKHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNT
VAPASGKILSGGIDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFK
GTGNMELQLDRNISNRRIYPAIDLIKSSTRRDDLLLDEKTVQRMWILRKYLADMNPIEAM
EFINDRIKFSKNNEEFLISMKG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaatctctgaactaaaagcaaaaacccttgctgatttacaggtaattgcaaaa
tctattggtctttctaaaactagccaacttaaaaaattagatttagtttatcaaatacta
gatacacaagctgcaaacccaagtaaagcagctgttgcaacttcaactactgaagaaaaa
ccaaaaacagtagataaaccaaaaagaaaacgtgtttctaaaactccacaagctacagta
actgctaatgaagaaaaagaaactccagaagaaaaaacagtagaaagaccaaaaaaaact
gctccaaatcatcctaaaccaactcaaaaaaaacctattccaagaaaagtggtaaacaaa
gagagtaaagatgatgtaaagactgaagctactccttctattaagaatgataagcaagaa
caaaaacctgcaaatcaacaaaacaagccacagcataaaaaccctaatcaacaaaatact
aaatcgaaaaacaataatcaaaacagagataaaaaacctactgtaagcagaggtaataaa
tctaacaataggtacagagatcctgattttgagttcgatggaattatagagagcgaagga
gttttagaaatgatgccagatggttatgggttcttaagatcatcagattacaactattta
tcttcgccagatgatatttatgtttctcaatctcaaataaaattatttggtttaaaaact
ggagatacagttagaggaaatgttcgtccgccaaaagaaggtgaaaaatattttccatta
attagagtatcaaaaataaacggattaaatcctaacattgttagagatagggtttctttc
gaacatttaacacctttatttccacaagaaaaattcaatttagcagaaaaaggaagttct
ttatcaacaagaattatcgatttattttctcctattggaaaaggacaacgtggtatgatt
gtagcacagcctaaaactggtaaaaccatgttattaaaggatgttgcaaaggcaattgcc
accaatcatccagaagtttatcaaatagtattattaattgatgaacgtcctgaagaagtt
acagacatgcaaagaagtgttcgtggagaagttgtagcatctacttttgatgaaccagca
gataaacacgtaagagttgccaacattgttttagaaaaagcaaaacgtttggtagaatgt
ggacacgatgttgttattcttttagattcaattacacgtttggcaagagcatataataca
gttgcaccagcatctggtaaaatactttctggtggtatagatgcaaatgcattacacaaa
ccaaaacgtttctttggtgcagctagaaacatagaaaatggaggttctttaaccattatc
gcaactgcacttacagaaacaggttctaaaatggacgaagttattttcgaagaatttaaa
ggaactggtaacatggaacttcaattagatagaaatatttctaacagaagaatttatcct
gcaatcgatttaattaaatcttctacaagacgtgatgatttattattagacgagaaaact
gtgcaaagaatgtggattctacgtaagtatttagcagacatgaaccctattgaagctatg
gagttcattaatgatagaattaaattctctaaaaataatgaagagtttttaatctccatg
aaaggataa
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