Polaribacter pectinis: H9W90_03730
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Entry
H9W90_03730 CDS
T08187
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppec
Polaribacter pectinis
Pathway
ppec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9W90_03730 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppec03019
]
H9W90_03730 (rny)
Messenger RNA biogenesis [BR:
ppec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9W90_03730 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
DUF5308
Motif
Other DBs
NCBI-ProteinID:
QNM86241
UniProt:
A0A7G9LC92
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Position
785885..787453
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AA seq
522 aa
AA seq
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MEGILLPAIVGVLIGIAVGFIIAKAMEKSKGKKLLNGTRKEAASILKEAKIDAESIKKEK
ILQAKEKFIELKSEHEKVILSREKKISDVEKRIRDRESQVASEVDKNKKLNKSLEQKEKD
YDFKLDFLENKESELEVMHKRHVDMLEQISGLSADEAKKELVTSLKDEAKTEAMAFVQTS
IEEAKLTAEQEARKVVLGTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRALEA
ATGVEIIVDDTPDAIILSCFDPIRREIARLSLHKLVTDGRIHPARIEEVVGKTEKQITQE
IIEVGKRTVIDLGIHGLHPELVKAVGRMKYRSSYGQNLLQHSREVANLCGIMAAEMGLNS
KVAKRAGLLHDIGKVPNEESELPHALLGMQWAEKYGEKPDVCNAIGAHHDEIEMKTLISP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEAIAFGFTGVQKAYAIQAGRELRVMVESTK
VNDTKAAELSFSISQKIQNDMTYPGQVKVTVIRETRAVNVAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaatactactacccgctattgtgggagttttaataggaattgcagttggtttt
atcattgcaaaagctatggaaaaatcaaaaggtaaaaaattacttaatggtacaagaaaa
gaagctgcttctattctaaaagaagctaaaattgatgcagaatcaattaaaaaagaaaaa
atactacaagcaaaagagaaatttatagagcttaaatcggaacacgaaaaagtaatctta
tctagagaaaagaaaatttctgacgtagaaaaacgtattagagatagagaatctcaagtg
gcatctgaagtagataaaaataaaaaactgaataagtctttagagcaaaaagagaaagac
tacgattttaagttagattttttagagaataaagaaagtgagttagaagtaatgcacaaa
cgtcatgtagatatgttagagcaaatctctgggctttctgcagatgaagcaaagaaagaa
ttagttacttcattaaaagacgaagcaaaaacagaagcaatggcttttgttcaaacatct
atagaagaagcaaaattaacagcagaacaagaagctagaaaagtagttttaggtactata
caaagagttggtgtagaacaagctgtagaaaactgtgtatctgtctttaacttagaatca
gatgatgttaaaggaagaattattggtagagaagggcgtaatattagagctttagaagct
gcaacaggtgtagaaattattgtagatgacacaccagatgcaattatactttcttgtttc
gatccaattagaagagaaatagcacgtttatctttacataaattggttacagatggtaga
attcacccagcaagaattgaagaagttgttggtaaaacagaaaaacaaattactcaagaa
attatagaagttggtaaaagaacagtaatcgatttaggaattcatggtttacatccagaa
ttagtaaaagcggttggtagaatgaagtacagatcttcttacggacaaaatttattgcaa
cactctagagaagttgctaatttatgtggaattatggctgcagaaatggggttaaattct
aaagtagcaaaacgtgcaggtttattacacgatattggtaaagtaccaaatgaagaaagt
gagttacctcacgctttattaggaatgcaatgggcagaaaaatatggtgaaaaaccagat
gtttgtaatgctattggagctcaccatgatgagattgaaatgaaaacattaatttctcct
atcgttcaagtttgtgatgcaatttcaggagcaagaccaggagcaagacgtcaagtttta
gattcttacatacaacgtttaaaagatttagaagcaatcgcttttggctttacaggagtt
caaaaagcttacgcaatacaagcaggacgtgagttacgtgtaatggtagaaagcacgaaa
gttaacgacaccaaagcagcagaattatcatttagtatttcacaaaaaatacaaaatgat
atgacgtatccaggtcaagtaaaagtgactgtaattagagaaacaagagcagtaaacgta
gcaaaatag
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