Polaribacter pectinis: H9W90_05210
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Entry
H9W90_05210 CDS
T08187
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppec
Polaribacter pectinis
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppec03009
]
H9W90_05210 (rlmD)
Enzymes [BR:
ppec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H9W90_05210 (rlmD)
Ribosome biogenesis [BR:
ppec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H9W90_05210 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
PrmA
Methyltransf_32
Methyltransf_12
Cons_hypoth95
Met_10
Methyltransf_15
FtsJ
N6_N4_Mtase
Methyltransf_11
UPF0020
Ubie_methyltran
mRNA_G-N7_MeTrfase
DOT1
Methyltransf_4
Methyltransf_8
Motif
Other DBs
NCBI-ProteinID:
QNM86519
UniProt:
A0A7G9LD20
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All DBs
Position
1105354..1106808
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AA seq
484 aa
AA seq
DB search
MPRRERNKFVKKNQVLELKIEDYAFGGKGIARIHSEEGSFVVFVPNTLPGQLVKAQISKS
SKNYAEAKLIDVLEPSEDEVEVEFQDIPGAPYIQLPIELQHRYKKESTLSLFKRIGKVEN
IEDLFDEFVTSPNVFHYRNKMEYGFSAIGYDRIHKTDKDEFTLGFKRRGVWWMGDNLEKD
SGLFDKQMEDNLKNIRQYCIETGLDPWHGPKKEGFFRYFVVRKSFKTDELLCNLVTTSPD
LDKFDLQKFANFLKDIFGERLAGLLHTINDETGDRTIATSGSLELVYGKDKIVEELLGLN
FEISMKSFFQTNPKCAEKLYNKVVEYVLEDKSKVDNTVVMDLFCGTGTIGQIVASKSENA
KIVGVDIVASAIADAKKNAKRNNIEGLKFFAADVGKFLIAHPEYQNKIKTIILDPARAGI
APKTLQKIINLNADRMVYVSCNPATQARDTELLREAGYLIKKISLVDQFPHTSHIETVVL
FEKS
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtagagaacgcaacaaatttgtaaaaaagaatcaagttttagaattaaaaatt
gaagattacgctttcggaggaaaaggaattgccagaattcattccgaagaaggaagtttc
gttgtatttgttccaaatacgttgcctgggcaattggtaaaagcacaaattagcaaatcc
agcaaaaactacgcagaagctaaattaattgatgttttagaaccatctgaagacgaagta
gaagtggaatttcaagacattcctggagcgccttacattcaattaccaattgagcttcaa
catagatataaaaaagaaagtactttatctttattcaaaagaataggaaaagtagaaaat
atagaagatttattcgacgaatttgtaacctcgccaaacgtatttcattacagaaataaa
atggaatatggtttctctgcaattggttatgacagaatacataaaaccgataaagacgag
tttactttaggttttaaaagacgtggagtttggtggatgggcgataatttagagaaagat
tctggtttgttcgacaaacaaatggaagacaatctaaaaaacattcgtcaatattgtatt
gaaactggtttagatccttggcatggacctaaaaaagaaggtttcttcagatattttgta
gttcgtaaatcttttaaaacagacgagttattatgtaatttagtaacaacttctcctgat
ttggataagttcgatttacaaaaattcgcaaatttcctaaaagatatttttggagaacgt
ttagctggacttctacacacaattaacgacgaaactggcgacagaacaatcgcaacttca
ggaagtttagaactcgtttatggaaaagacaaaatcgtagaagaattattaggtttaaat
tttgaaatcagcatgaaaagcttttttcaaaccaacccaaaatgtgcagaaaaactctat
aacaaagtggtagaatatgttttagaagacaaatctaaagtagacaatactgtggttatg
gatttattctgtggtacaggaacaatagggcaaattgttgcttctaaaagcgaaaacgca
aaaatagttggtgtagatattgtagcttccgcaattgcagacgcaaagaaaaacgccaaa
agaaataatattgaaggtttaaaattctttgcagcagatgttggtaaatttttaattgcg
catcctgaatatcaaaataaaataaaaacgattattttagatcctgcaagagcaggaatt
gcaccaaaaacattgcagaaaatcatcaatttaaatgcagatagaatggtgtatgtttct
tgtaatcctgcaacacaggctagagatacagaattgttaagagaagctggttatttaatt
aaaaagattagtttggtagatcaatttccacatacgagtcatattgaaactgtggttttg
tttgaaaagagttaa
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