Polaribacter pectinis: H9W90_06235
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Entry
H9W90_06235 CDS
T08187
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppec
Polaribacter pectinis
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppec03016
]
H9W90_06235
Enzymes [BR:
ppec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H9W90_06235
Transfer RNA biogenesis [BR:
ppec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H9W90_06235
Prokaryotic type
tRNA splicing ligases
H9W90_06235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNM86713
UniProt:
A0A7G9LDL4
LinkDB
All DBs
Position
complement(1325594..1326985)
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AA seq
463 aa
AA seq
DB search
MGNKLKGKDLIKLGFPKNNSINIALGQISRYRKREKKERILEEAKEVLKTPEKFQGNAIW
GKVAEGLVKPVEVKMHQLRNTRVPFSIYGENEIDEQAKFQLYDALKLPIAVQGALMPDAH
YGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLTIYPISISFLKGKVHQFENILKNHTKFG
MRETHDKKQDHEIFYRDEFIEIPLVKRLKDKAFKQLGTSGGGNHFVEFGTVSITEENNEF
GLKIGEYIGVLSHSGSRGLGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDNIHDRIAKELGAKPIAKIENHHNFAWKEMVNDRECIVHRKGATPAKN
GELGIIPGSMTASGFIVRGLGNKESLQSASHGAGRKFSRKKCKEKFTKSDIKHQLNMNNI
TLIGGGIDEAPMAYKDIKKVMANQQELVEVQGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattaaaaggaaaagacctcataaaattgggctttccaaagaataatagt
atcaatatcgctttagggcaaattagcagatacagaaaaagagaaaagaaagagcgcatt
ttagaagaagcaaaagaggttttaaaaacaccagaaaagtttcaaggaaatgcaatttgg
ggcaaagttgcagaaggtttggtaaaacctgtggaagtaaaaatgcatcaattaagaaac
acgcgagttccgttttctatttatggagaaaatgaaattgacgaacaagcaaagtttcaa
ttatacgatgctttaaaactaccaattgcagtgcaaggcgcattaatgccagatgcacat
tatggttatggtttaccaattggaggcgttttagcgacagataatgcagtaattccttat
ggagttggcgtggatattggttgtagaatgtgtttgacaatttatccgatttctatttct
tttttgaaaggaaaagtacatcaattcgaaaacattttaaagaatcatacaaaattcgga
atgcgagaaacgcacgataaaaagcaagaccacgaaatattttacagagatgagtttatc
gaaattccgttagtaaaacgtttaaaagacaaagcatttaaacagttaggaacttctgga
ggtggaaatcattttgtggaatttggtacagtttcaatcaccgaagaaaacaacgaattc
ggtttaaaaattggagaatatattggcgttttatcacacagtggttcacgtggtttgggc
gcaaatattgcgaaacattacacgtatttggcaactaaacagtgtccattaccaaaaaat
gtgcagcatttggcgtggttagatttaaacacgcacgatggacaagaatattggttggca
atgaatttagcaggcgattatgccaaagcctgtcacgataatattcacgatagaattgcc
aaagaattgggtgcaaaaccgattgcgaaaattgagaatcatcacaattttgcgtggaaa
gaaatggtaaatgacagagaatgtattgtgcacagaaaaggcgcaacaccagctaaaaat
ggcgaattgggcatcattccaggttctatgacagcgtcaggttttatcgttcgtggtttg
ggaaacaaagaaagtttacagtcggcttcacatggagctggtagaaaattttctcgtaaa
aagtgtaaagaaaagttcacaaaaagcgatataaaacatcaattgaatatgaacaatata
acactaattggtggtggaattgacgaagctccaatggcgtacaaagacattaaaaaagtg
atggcaaatcagcaagaattggtggaagttcagggaacatttacgccgaaaatagtaaga
atggataaataa
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