Polaribacter pectinis: H9W90_06465
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Entry
H9W90_06465 CDS
T08187
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppec
Polaribacter pectinis
Pathway
ppec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9W90_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppec03019
]
H9W90_06465
03400 DNA repair and recombination proteins [BR:
ppec03400
]
H9W90_06465
Enzymes [BR:
ppec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9W90_06465
Messenger RNA biogenesis [BR:
ppec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9W90_06465
DNA repair and recombination proteins [BR:
ppec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9W90_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
MarR_2
HTH_11
MCM_WH_arc
Baculo_IE-1
HTH_24
NirdL-like_HTH
Poxvirus_B22R_C
DUF2582
Motif
Other DBs
NCBI-ProteinID:
QNM86756
UniProt:
A0A7G9LDQ7
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All DBs
Position
1404952..1406844
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AA seq
630 aa
AA seq
DB search
MISPKEILKKYWGFSEFRNPQEEIITAVLEQKDVIALLPTGGGKSVCFQVPALAKEGVCL
IISPLIALMQDQVENLKNLGIKATTIPSGVKQDEIITLFDNIKFGSIKFLYISPERLQST
FIQQKIKELNVNLVAIDEAHCISEWGHDFRPSYRNIKVLRELIPNVNFIALTATANKRVL
NDIEENLDLKNPQVFKKSFLRGNLAYQIFTVEDKLQRLLQIFTKTKSPAIVYVNSRKKTI
EISNFLNANNFKSGFYNAGLSSIEKKISFTNWMTEKTPIIVATNAFGMGIDKPNVGIVVH
YNLPTSIENYVQETGRAGRNNKKSFAALLQNENDILLFKKQTEKSLPSITDIKEVHRKLY
QYFRIANGEIFEESFPFNLLEFSKKYNFSTFKVDAILKILSNNGIIEISNNYNEKSTLQF
TATHKNVLNYIDKNKILKNFTNSILRTYGGLFEQEMKVNEFIIAKKTGITSQQVVTNLKR
LEEDGLLIYKPIISDVEITFLVPREDDKTINRFSREIAQLIHQKKKKAADFISFIKNDSI
CRSIQVLGYFDEKTNHKCGICDVCLSERKISKKNISFAILKLLENNKNLSSQEISLNLET
NEQDILIHLRYLLSENKLILNHLNKYQLNK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgccaaaagaaatactaaaaaaatattggggtttttctgaatttagaaatcca
caagaagaaataattacagccgttttagaacaaaaagatgtaattgctttgttgccaact
ggtggaggaaaatctgtttgttttcaagttcctgcactggcaaaagaaggagtttgctta
attatttctcctttaattgcattgatgcaagaccaagtagaaaacttaaaaaacttgggc
attaaggcaacaacaattccttctggagtaaaacaagatgaaattattacgcttttcgac
aatattaaattcggaagcataaagttcttatatatttctccagaaagattacaatctact
tttattcaacaaaaaattaaggaattaaatgtaaatcttgttgctattgatgaagcacat
tgtatctctgaatggggacatgattttaggccatcatacagaaatataaaagttttacga
gagctaattccaaatgtaaattttattgctttaacagcaacagctaacaaaagagtatta
aatgatattgaagaaaatttagatttaaaaaatcctcaagttttcaaaaaatcgttttta
agaggtaatttagcgtatcaaatttttacggtcgaagataaattacaacgtttactacaa
atctttacaaaaactaaatcaccagcaattgtatatgttaattcaagaaaaaagacaata
gaaatttctaattttctaaatgctaataattttaagagtggtttttataacgcaggttta
tcttccatagaaaagaaaatttcttttactaattggatgacagaaaaaacaccaataatt
gttgccacaaatgcttttggaatgggaattgacaaaccaaacgttggtattgttgttcat
tataatttaccaacaagtatcgaaaactacgttcaagaaacaggcagagctggcagaaac
aacaaaaaatcttttgcagcacttttgcaaaatgaaaacgatattttattatttaaaaaa
caaaccgaaaaatcgctaccaagtattacagatattaaagaagtccatagaaaattatat
caatattttagaattgcaaacggagaaatcttcgaagaatcatttccttttaatttgtta
gagtttagtaaaaaatataatttttctacttttaaagttgatgcaattcttaaaatttta
tctaataacggaattattgaaattagtaataattacaacgagaaatctacattacaattt
acagcaacacataaaaatgtacttaactatattgataaaaataagattctaaaaaacttt
acaaattcaattttaagaacgtatggcgggctttttgagcaagaaatgaaagtaaatgaa
tttataattgctaaaaaaacaggaataacctcacaacaagttgttactaatttaaaacga
ttagaagaagatggtctgttaatttataaacccataatttctgatgtagaaatcactttt
ttagtaccaagagaagatgataaaactatcaatcgcttttcaagagaaattgcgcagtta
attcatcagaaaaagaaaaaggctgcagactttatttcttttattaaaaatgatagtatt
tgtagaagcattcaagttttagggtattttgatgaaaaaactaatcataaatgtggaatt
tgtgacgtttgtctttcagaaagaaaaatctcgaaaaagaatatttcatttgcaatttta
aagcttttagaaaataataaaaatttatcttcacaagaaattagcttaaatttagaaaca
aacgagcaagacattttaatacatttgcgatatttgttatcagaaaataaattgatatta
aatcatctaaataaataccaacttaataaataa
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