Polaribacter pectinis: H9W90_08975
Help
Entry
H9W90_08975 CDS
T08187
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppec
Polaribacter pectinis
Pathway
ppec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9W90_08975 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppec03019
]
H9W90_08975 (recQ)
03400 DNA repair and recombination proteins [BR:
ppec03400
]
H9W90_08975 (recQ)
Enzymes [BR:
ppec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9W90_08975 (recQ)
Messenger RNA biogenesis [BR:
ppec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9W90_08975 (recQ)
DNA repair and recombination proteins [BR:
ppec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9W90_08975 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
Helicase_Sgs1
Sigma70_r4_2
GerE
HTH_24
zf-CXXC
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QNM84340
UniProt:
A0A7G9L6U1
LinkDB
All DBs
Position
complement(1985896..1988007)
Genome browser
AA seq
703 aa
AA seq
DB search
MKKQTHALLNNVFGYENFRPLQEEIINRTIEGKDSFVLMPTGGGKSMCFQIPALLFDGIT
VVVSPLISLMKDQVQALKSNGIKADFFNSSISVQEENQVITKAINGDLQLLYLSPEKLLS
VSNTWLKQLNIKLVAVDEAHCVSMWGHDFRPEYTQLKVFRNSLPNVPFMALTATADKSAR
KDIEEQLGLQKSKLFISSFDRKNLSIEVRGQVQKKKKLQEIVSFINRRKNESGIIYCLSR
KNTEEVAIHLKELGHSVAFYHAGMDNEDREKTQTDFINDDTKIIVATIAFGMGIDKSNVR
FVIHYNLPKNLEGYYQEIGRAGRDGLPSETLLYYNMRDFVLYSQFAEEGANSVMQKEKLN
RMLQFAEAKSCRRKILLSYFGEHLTENCGNCDVCANPPKDFDGTIITQKALSGIARMGEK
DGITMLINVLRGSNNADIHSKQYFNLKTYGIGKDVSFFNWRDYIIQMANQGLIEIMYAES
SALKITPIGWKVLKGEKTIRLTTPISIDEKKKIKKTVKTVIEGETNKDLFTELKKLRYAI
SKEEKMPAYIVFSDKSLKLMASELPTTENEFLSISGVGMNKMEKYGDEFMNIIRKYKNVA
KPRKTPTTLKTFSLYKEGLTPKEIAEERDLSITTIFSHLSQLYSEGKNIDLEQFVSKETI
DKVRVAFHEFDRKIELKPIYEKLNEEVSYSEIRISITLILKNE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaacagactcacgctttattaaataatgttttcggttatgagaactttcgtcct
ttacaagaggaaattatcaatagaaccatagaaggaaaagacagttttgtattaatgcca
actggtggtggaaaatcgatgtgttttcaaattccagcgttgctttttgatggaattact
gtggtggtttctccgttgatttctttaatgaaagatcaagtacaagctttaaaatcaaac
ggaattaaagctgatttttttaatagctccatttctgtacaagaagaaaaccaagtcatt
acaaaagctattaatggcgatttacaacttttatatttatcacccgaaaaactactatca
gttagtaatacctggctaaaacaactaaatataaagttagttgctgttgatgaagcacat
tgcgtaagtatgtggggccatgattttagaccagaatatacacagttaaaagtatttaga
aattcgcttccaaatgtaccttttatggcattaactgctactgctgataaatcggcaaga
aaagatatagaagagcaattaggtttacagaaatccaaattatttatttcttcttttgat
agaaaaaacttaagtattgaagtccgtggacaagttcaaaaaaagaaaaaattacaagaa
attgtcagttttataaatcgaagaaaaaacgaaagtggtattatttattgtttgagtaga
aaaaatactgaagaagttgccattcacttaaaagaacttggacattctgttgctttttat
catgcaggaatggacaatgaagacagagaaaaaacacaaactgattttataaatgatgat
acaaaaataattgttgctacgattgcttttggaatgggaattgacaaatcgaacgttcgt
tttgtaattcattataatttaccgaaaaaccttgaaggttattatcaagaaataggaaga
gcaggaagagatggtctgccatctgaaactttgctttattataatatgagagattttgtt
ttgtatagtcagtttgcagaagaaggcgcaaattctgtaatgcaaaaagaaaaactcaat
agaatgcttcaatttgcagaagcaaaatcatgtagaagaaaaatattattatcttatttt
ggggaacatttaaccgaaaattgtggcaattgtgatgtttgtgcaaacccgcccaaagat
tttgatggtactattataactcaaaaagcattatctggaattgcaagaatgggcgaaaaa
gacggaattactatgctgattaatgtcttaagaggaagtaataatgcagatattcactca
aaacagtatttcaacctaaaaacgtatggaataggaaaagatgtttctttttttaattgg
cgagattacatcattcaaatggcaaatcaaggtttaatagaaataatgtacgcagagagt
tctgctttaaaaataacacctattggatggaaagttttaaaaggagaaaaaacaatccga
ttaacaactccaataagtattgatgaaaaaaagaaaattaaaaaaacggtaaaaactgta
attgaaggcgaaacaaataaagacttatttaccgaactaaaaaaattaagatatgctatt
tctaaagaagaaaaaatgccggcttatattgttttcagtgataaatcattaaagttaatg
gcgagcgaacttccaacaaccgaaaacgagtttttatcaatttctggtgtaggaatgaac
aaaatggaaaagtatggagatgaatttatgaacattattcgaaaatataaaaatgttgcg
aagccaagaaaaacgcctacaacattaaagacattcagtttatataaagaaggattgaca
cccaaagaaattgctgaagaaagagatttatctattactactattttttcgcatttgtcg
caattatattccgaaggaaaaaatattgatttagaacaatttgtcagtaaagaaacaata
gataaagtacgcgttgcttttcatgaatttgaccgaaaaatagagctaaaaccgatttac
gaaaaattaaacgaagaagtttcctattcagaaattagaataagtattacccttatttta
aaaaatgaataa
DBGET
integrated database retrieval system
