Phyllobacterium pellucidum: LLE51_009770
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Entry
LLE51_009770 CDS
T11259
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pped Phyllobacterium pellucidum
Pathway
pped03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pped00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLE51_009770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pped03019
]
LLE51_009770
Messenger RNA biogenesis [BR:
pped03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLE51_009770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UGY08348
LinkDB
All DBs
Position
2019195..2020868
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AA seq
557 aa
AA seq
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MANSDQAELVFLPLGGVGEIGMNLAMYGYGPAHKREWVVVDMGVSFAGPEFPGADLILPD
IRFLQAERQNLKGIVITHAHEDHYGALLDLWPLLNVPVYGTPFTAGLLEAKRHAEPGAPD
IPVTIYRAGETFNVGPFEFEALAVTHSIPEPVSLAIRTPLGTIIHTGDWKMDPEPSMGPL
INEARFRAIGDEGVLAMMCDSTNALREGESPSEREVGESLRNIIENARGRVAITTFSSNV
GRIRSIALAARDAGRQVLVLGRSMKRMIDVASELGYLDDVPEFLSEDDYGFIPRENMVII
LTGSQGEPRAALAKLARDEMRSVALSAGDLVIYSSRTIPGNEKPIIETKNLLIEQGIQII
SDDDQLVHVSGHPRRNELRRMYEWVRPRILVPVHGEAAHLVAQGSLAAMAGIPEVPQVRN
GDILRLAPGRAEIIDKAPFGRLVKDGKLIGDEEEVGIVERRKLAYVGHVAVSMLLDDNYN
IIEDPEIVPVGLPESDDEGELLEDLLYDAAVSAVQSIPREKRRDLSMVREAVRRAVRAAT
NEVWGKKPVVTVFVTRP
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattccgatcaagctgagcttgttttccttccactcggcggtgtcggtgagatc
ggaatgaacttggccatgtacggctacggccctgcgcataagcgcgaatgggtggtggtg
gatatgggcgtcagctttgccggccccgaatttcccggcgccgatctcattctgccagac
atccggttcctgcaggccgaacgccagaacctcaagggcatcgtcatcacccacgcccat
gaagatcattacggggcgctgctcgatctgtggccactcctcaacgtcccggtttacggc
actccgttcactgctggactgctcgaggccaagcgtcatgccgagcccggcgcgcccgac
attccggtaacgatctatcgcgccggcgagacatttaacgtcggcccattcgaattcgag
gcgctggcggtcacgcattcgatccccgagccggtatcgctcgcgatcaggacaccgctt
ggcacgatcatccacaccggcgactggaagatggacccggagccatcaatggggccgctg
atcaatgaagcgcgcttccgcgccatcggcgatgaaggcgttctcgccatgatgtgcgat
tcgacgaatgcgttgcgcgaaggcgaatccccttccgagcgcgaggtgggtgagagcctg
cgcaatattatcgagaacgcgcgcggccgcgtcgccatcaccaccttttcgtcgaatgtc
ggccgtatccgctcgatcgccttggccgcacgcgatgcgggaaggcaggtattggtgctc
ggccgttcgatgaagcgcatgatcgatgtcgccagtgagctcggatatctcgacgatgtc
cccgaattcctgtcggaagacgattacggcttcattccgcgcgagaacatggtgattatc
cttaccggtagccagggcgaaccgcgcgcagcgctcgccaagctcgcccgcgatgaaatg
cgcagcgtcgcgctttcggccggcgatctggtgatctattcgtcccgcacgatccccggc
aatgaaaagcccatcatcgagaccaagaaccttttgatagagcagggcatccagatcatt
tcggatgacgaccagctcgtgcatgtttccgggcatccccgtcgcaacgagttgcggcgg
atgtatgagtgggtgcgtccgcgcatcctcgtgccggtgcatggcgaggcggcgcatctc
gtcgcccaaggttcactcgctgccatggccggcatcccggaagtgccccaggtgcgcaat
ggcgacatcttgaggctcgcgccgggcagggccgagatcatcgacaaggcgccgttcggc
cggttggtcaaagacggcaagctcattggcgacgaggaagaggtgggtatcgtcgaacgc
cgcaagctcgcctatgtcgggcacgttgcggtgtctatgctactcgacgacaactacaac
attattgaagatccggagatcgtgccggtggggctaccggaaagcgacgatgagggcgaa
ctgctcgaggacttgctgtacgatgcggcagtaagcgccgtacaaagcattccccgtgaa
aagcgcagggatctgtcgatggttcgcgaagcagtgcgccgcgctgtacgggcggcaaca
aacgaggtctggggcaagaagccggtggttaccgtcttcgtgacccgcccatag
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