Phyllobacterium pellucidum: LLE51_011865
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Entry
LLE51_011865 CDS
T11259
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pped Phyllobacterium pellucidum
Pathway
pped03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pped00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LLE51_011865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pped03021
]
LLE51_011865 (rpoB)
03400 DNA repair and recombination proteins [BR:
pped03400
]
LLE51_011865 (rpoB)
Enzymes [BR:
pped01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LLE51_011865 (rpoB)
Transcription machinery [BR:
pped03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LLE51_011865 (rpoB)
DNA repair and recombination proteins [BR:
pped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LLE51_011865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UGY08733
LinkDB
All DBs
Position
complement(2447779..2451915)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTHSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRLDEGLQAVFK
SVFPISDFSGASMLEFVKYEFEAPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF
AARVIPYRGSWLDIEFDAKDVVYARIDRRRKIPVTSLLMALGMDSEEILSTFYNSITFSR
DGEGWRIPYSVDRFKGFKATSDVIDADTGEVVLESGKKLTARSAKQLAEKGLKFIKATED
DLFGSYLAEDIVNFETGEVYLEAGDELDEKTLKVLLDTGTEEINVLDIDHVNIGPYIRNT
LAVDKNESRQDALFDIYRVMRPGEPPTIDSAEAMFKSLFFDSERYDLSAVGRVKMNMRLD
LNAEDTVRVLRKEDILAVVKMLVDLRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTDEVVYLSAMEEAKYHVAQANVELDATGGFTDEFVVCRHAGEVLMAPRENV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPIVAR
DSGAAIGARRTGIVDQVDATRIVIRATEDLVPGKSGVDIYRLMKFQRSNQNTCINQRPLV
RVGDRIEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLVDVLNGKVAVAGPKAFKKGTTVTQAVMGEYPRSQWW
QFAVEDEKVQGEIEALRNQYDDSKKLLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIAAVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGELIEAYKAQGDIAPLRTTIESIIPDNDRNEPVRNYDDESIVRLGEQMKR
GVSIATPVFDGAHEPDINVMLEQAGLKSSGQSTLYDGRTGETFDRQVTVGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTRQQEQQQALPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacccattctttcaatggtcgtaggcgcgtacgcaagtttttcggtaagatt
ccggaagtcgcagagatgccgaacctcatcgaggttcaaaaagcttcctacgatcagttt
ctgatggtggaagagcccaagggcgggcgactggatgaaggtctgcaggctgtcttcaag
tctgtatttccgatttcggatttctcgggcgcttccatgctcgaattcgtcaagtacgag
ttcgaagctcccaagttcgacgtggatgaatgccggcagcgcgatctgacctatgcagcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacaggacgtctacatgggcgatatgccgctcatgacggac
aacggcacgttcattgtgaacggcaccgagcgcgttatcgtatcgcagatgcaccgttcg
cccggcgtgttcttcgatcacgacaagggcaagacgcattcgtcgggcaagcttcttttc
gctgcccgcgtcattccataccgcggttcctggctcgacatcgagttcgatgccaaggac
gtcgtctatgcgcgtatcgatcgccgccgcaagattccggtgacgtcgctgctcatggcg
cttggcatggactcggaagagattctgtcgaccttctacaactccatcacgttcagccgt
gacggggaaggctggcgcattccttattcggtcgaccgcttcaagggctttaaggccacc
tccgacgtgatcgacgccgacaccggcgaagtcgtgctcgaatccggcaagaagctgacc
gcacgcagtgccaagcagcttgctgaaaagggcctgaagttcatcaaggccaccgaggac
gacctgttcggctcgtaccttgccgaggacatcgtcaatttcgagaccggtgaggtttac
ctcgaagccggcgacgaacttgacgagaagaccctcaaggttctgctcgataccggcacg
gaagaaatcaacgttcttgatatcgaccatgtcaatatcggaccgtatatccgcaacacg
ctggccgtggacaagaacgaaagccgccaggatgcgctattcgacatctaccgcgtgatg
cgtccgggtgagccgccaacgatcgactcggcggaagccatgttcaagtcgctgttcttc
gacagcgagcgctatgatctgtcggctgtcggccgcgtgaagatgaacatgcgcctcgac
ctcaacgcggaagacactgttcgtgttctgcgcaaggaagacatccttgccgtggtcaag
atgcttgtcgacctgcgcgatggccgtggtgaaatcgacgacatcgacaatctcggcaac
cgccgtgtccgttcggtcggcgaattgatggagaaccagtaccgtgttggcttgcttcgc
atggagcgcgccatcaaggaacgcatgtcctcgatcgaaatcgacaccgtaatgccgcag
gatctgatcaacgcgaagccggctgccgcagccgttcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggatcagaccaaccccttgtccgagatcacgcacaagcgtcgtctt
tcggcacttggaccgggcggtttgacccgcgagcgcgccggcttcgaagttcgcgacgtt
catccgacgcattacggccgtatctgcccgatcgaaacgccggaaggcccgaatatcggt
ctgatcaactcgctcgcaaccttcgcccgcgtcaacaagtacggcttcatcgagagcccg
taccgcaagatcgttgacggcaaggtcacggacgaagtcgtctatctgtcggccatggaa
gaagccaagtatcacgtggcgcaggccaatgtggaactggacgccaccggcggattcacc
gacgaattcgtcgtctgccgccatgccggtgaagttctgatggcgccgcgtgaaaacgtg
gacctgatggacgtttcgcccaagcagctcgtttcggtcgccgcagcgctcattccgttc
ctcgagaacgatgacgccaaccgcgccctgatgggttcgaacatgcagcgtcaggccgtt
cctctggttcgcgccgaggctccgttcgtcggcaccggcatggaaccgatcgttgcgcgc
gactcaggcgccgctatcggtgcacgccgtacgggtatcgttgaccaggtagatgcgacc
cgtatcgttatccgtgcgacggaagacctcgtgcccggcaagtcgggcgtcgatatctat
cgcctgatgaagttccagcgctcgaaccagaacacctgtatcaaccagcgtccgctggtg
cgtgtgggtgaccggatcgagaagggcgacatcatcgctgacggtccttcgaccgatctt
ggcgatctggcgctcggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaac
tatgaagactcgatcctgctttccgagaagatcgtttcggacgacgtcttcacctcgatc
catatcgaggagttcgaagtcatggcccgcgacacgaagctcggacctgaggaaatcaca
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgatattctcgtcggcaagattacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcg
gacgtccgcgatacctcgatgcgcatgccgcccgggacctacggtacggttgtggaagtt
cgcgtcttcaatcgccacggcgttgagaaggacgaacgcgccatggcaatcgagcgtgag
gaaatcgagcgtctcgccaaggaccgtgacgacgagcaggcaattctcgaccgcaacgtc
tatggccgcctggtcgatgttctcaacggcaaggtagccgttgccggaccgaaggcgttc
aagaagggcacgaccgttacccaggcagtcatgggtgaatacccgcgctcccagtggtgg
cagtttgccgtcgaggacgagaaagtacagggcgaaatcgaagctctgcgcaaccagtac
gacgattccaagaagctgctcgagcagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgacgagatgcctcctggcgtcatgaagatggtcaaggtcttcgttgctgtgaagcgc
aagatccagccaggcgacaagatggccggccgtcacggcaataagggcgtcgtttcgcgt
atcgccgctgttgaggatatgccgttccttgaagacggaacgcatgtcgatatcgtgctc
aatccgcttggcgtgccaagccgcatgaatgtcggtcagatcctcgaaacgcatctcggc
tgggcctgcgccggcatgggcaagaagatcggcgagctgatcgaagcctacaaggcacag
ggcgacattgcgccgctccggaccacgatcgagtcgatcattccggacaacgaccgcaat
gagccggttcgcaactatgacgacgagagcatcgttcgtctcggtgagcagatgaagcgc
ggtgtatcgattgcaacgccggtcttcgacggtgcgcatgagccagacatcaacgtgatg
ctggaacaggcgggcctgaagtcctcgggtcagtcaacgctctatgacggacgtacgggt
gaaacgttcgatcgccaggttacagtcggctacatctatatgctgaagctgcaccacctg
gtcgacgacaagatccacgcccgttcgatcggaccttactcgctcgtcacgcagcagccg
ctgggtggcaaggcgcagttcggtggccagcgcttcggtgaaatggaggtctgggccctt
gaagcatacggtgcggcatacacgctgcaggaaatgctgacggtcaagtccgacgacgtt
gccggtcgtaccaaggtctacgaggcgatcgtccgcggcgacgatacgttcgaggccggc
attccggagagcttcaacgttctcgtcaaggaaatgcgttcgctcggactgaatgtcgaa
ctggacgatacgcgacagcaggaacaacagcaggcgcttccagacgctgctgaataa
DBGET
integrated database retrieval system
