Phyllobacterium pellucidum: LLE51_012095
Help
Entry
LLE51_012095 CDS
T11259
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pped Phyllobacterium pellucidum
Pathway
pped03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pped00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLE51_012095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pped03019
]
LLE51_012095
03009 Ribosome biogenesis [BR:
pped03009
]
LLE51_012095
Enzymes [BR:
pped01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LLE51_012095
Messenger RNA biogenesis [BR:
pped03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLE51_012095
Ribosome biogenesis [BR:
pped03009
]
Prokaryotic type
rRNA processing factors
LLE51_012095
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UGY08775
LinkDB
All DBs
Position
2495385..2498309
Genome browser
AA seq
974 aa
AA seq
DB search
MSDKMLIDASHQEETRVVVVRGNRIEEFDFESEHKKQIKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEAEAASQDEDHEEHASEQRSRDRNDRSS
RNRRRGRRGPRSGEESSKLDASSEENAEESAVTDESSEDEAVAEVAAEEASESQSDESGS
QTRAASIDADVISEAVVVDGDPEDTEENETPRSKKSGRRSGDDKDDAHDELDEVESVGAE
DAMEEVPTHQRFQRRQYNIQDVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP
NTARGGGISRKITSVQDRKRLKDIVKDLEVPKGMGVILRTAGANRTKPEVKRDYEYLMRL
WENVRSLTLASTAPTLVYEEGSLIKRSIRDLYNKDITEILVAGENGYREAKDFMRMLMPS
HAKVVQPYRELTPIFARNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTR
EHSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKRLKDCLKDDR
ARIQVGRISHFGLLEMSRQRIRASVLESTTQVCAMCGGTGHVRSASSIALHVMRSIEEYL
LRHSQNNIIVRTTVPTALYVLNHKRQNLADLEARFGLTISIEADDSVGAQHFAIDKGSIA
LGPIVPLAETPTLGIADDFEDADIPVEEADEVEDVQAADTARVDGDDGSRKRRRKRRRRG
GRDRQEAAAGEPGQSIRSDDDADDADQPPVPGEDAAAKKAREDENERRKKRRRGRRGGRK
NRRDGDDGDNYIAARAVPDAEPVFVTIPLPDFAKAKTIETVADEAESASVVVAVETPAVE
PVAEGVIAVIEEAPAKKPAKRKSRAKAAAEPVEAAAEPVETAAEAPAKPKRAPRKSTKKA
VIEEAVAAEESPAPQPEKVEAEAPAQVQPEPDAAEPKQEKVPSEPVVTSTVATEKKSEGE
AQPKRGWWQKKGFF
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaagatgctaatcgacgcctcccaccaggaggaaacacgggttgtcgtggtt
cgcggcaaccggattgaagaatttgactttgagtcggaacacaagaaacagatcaaaggc
aatatctatctggcgcgtgtcacacgcgtagaaccatccctccaggctgctttcgtcgag
tatggcggcaatcgccacggcttcctcgcattcagcgaaattcatcctgattactatcag
atcccggttgctgaccgtcaggcgctgatcgaagcggaagcggaagctgcaagccaggac
gaagatcacgaggaacatgcaagcgagcagcgcagccgcgatcgcaatgatcgcagctcg
cgcaatcgccggcgcggccgtcgtggcccgcgttcgggcgaagaatcgtcgaagctcgat
gcctcttcggaagagaacgccgaggagagtgccgtcacggacgaatcctctgaggacgaa
gccgttgcggaagtcgcagccgaagaggcgagcgaatcccagtctgacgaatcgggcagc
cagacccgcgcggcttcgattgatgccgacgtgatttccgaagctgtcgtcgtcgacggc
gacccggaagacacagaggaaaacgagaccccgcgttcgaaaaagtccggtcgccgctct
ggcgacgacaaggatgatgcgcacgacgaactcgatgaagtcgaatcggtcggtgccgag
gatgcgatggaagaggtgccgacgcaccagcgcttccagcgccgccagtacaacatccag
gacgtcatcaagcgccggcagatcctgctcgttcaggtcgtcaaggaagagcgcggcaac
aagggcgcagcgctgacgacgtacctttcgctcgctggacgctattccgtgttgatgccg
aacactgcccgtggcggcggaatttcgcgcaagatcaccagcgtacaggaccgcaagcgc
ctcaaggacatcgtcaaggatctcgaagttccgaaaggaatgggcgtcatcctgcgcacc
gccggtgccaaccgcacgaagcccgaggtcaagcgcgactacgaatatctgatgcggttg
tgggagaacgttcgaagcctcaccctcgcctctacagcaccgacgctggtctatgaggaa
ggcagcctcatcaagcgatcgatccgtgacctctataacaaggatatcaccgagatcctt
gtcgctggagagaacggctaccgcgaggccaaggacttcatgcgcatgctcatgccgagc
catgccaaggtcgtgcagccctatcgcgaattgaccccgatctttgcccgcaacggcatc
gaggcgcagctcgaccgtatgttgcagccgcaggtgacgctgaaatccggcggctacatc
atcatcaaccagaccgaagcgctcgtcgccatcgacgtgaactcgggtcgttcgacccgc
gaacactcgatcgaagacaccgcgctgcagaccaacctcgaggccgctgacgaagttgcg
cggcagttgcggttgcgcgaccttgccggcctcatcgtcatcgatttcatcgatatggaa
gagaaccgcaacaatcgtgcggttgagaagcggctgaaggattgcctcaaggacgaccgc
gcgcgcatccaggtcggccgaatttcgcatttcggtctgctcgaaatgtcgcgccagcgc
atccgcgccagtgttctcgaaagcacgacacaggtctgcgccatgtgcggcggcaccggg
catgtgcgctcggcctcgtcgattgcgctgcacgtcatgcgctcgatcgaggaatacctg
ctgcgccattcgcagaacaatatcatcgtacgtaccaccgttccgacggcgctttacgta
ctcaatcacaagcgccagaatcttgccgatctcgaggctcgttttggtctgacgatcagc
atcgaggccgatgacagcgttggtgcgcagcacttcgccatcgacaagggttcgatcgca
ctcggtcccatcgttccgctggcggagaccccgacgctcggcatcgccgacgatttcgag
gatgccgatattccggtcgaagaagctgatgaagtcgaagacgttcaggcggccgacacg
gcccgcgtcgacggcgacgacggttcgcgcaagcgccggcgcaagcggcggcggcgtggc
ggacgtgaccgtcaggaagctgccgcgggcgagccgggccaatcaatccgcagcgacgac
gatgcggacgatgcagatcaaccgcccgttccaggcgaggatgccgcagcgaagaaagca
cgcgaagatgagaacgaacggcgcaagaagcgtcgccggggtcgccgtggcggccgcaag
aaccgtcgcgacggcgatgacggcgataattacatcgctgcaagagccgtccccgacgcg
gaaccggtgttcgtaaccataccgcttccggactttgccaaggcaaagacgatcgagacg
gttgccgacgaggccgaatctgcctctgtcgtcgttgcggtcgagacacctgcggtcgag
ccagtggccgaaggggtgattgcagtcatcgaagaagcgcccgccaagaagcccgccaag
cgcaagtcgcgggcaaaggctgccgccgaaccggtggaggccgccgccgagccagtagaa
acggccgccgaagctccggccaagccgaagcgtgcaccgcgcaagtcaacgaagaaggct
gttatcgaagaggcggttgctgccgaggaatcgcctgctccgcaacccgagaaagtcgaa
gccgaagcgcctgcgcaagtgcagcccgagccggacgctgccgaaccgaagcaagagaaa
gttccgagcgagccggtcgttacatctaccgttgctacggaaaagaagagcgaaggtgaa
gcgcaaccgaagcgcggctggtggcagaagaagggtttcttctga
DBGET
integrated database retrieval system
