Phyllobacterium pellucidum: LLE51_018650
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Entry
LLE51_018650 CDS
T11259
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pped Phyllobacterium pellucidum
Pathway
pped03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LLE51_018650 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pped03400
]
LLE51_018650 (ligD)
Enzymes [BR:
pped01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LLE51_018650 (ligD)
DNA repair and recombination proteins [BR:
pped03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LLE51_018650 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGY11516
LinkDB
All DBs
Position
pPT1018:complement(380608..383244)
Genome browser
AA seq
878 aa
AA seq
DB search
MANGKLSRYTSKRDFKLTQEPSGGGEVNASNRLRFIVQKHDASRLHYDLRLELDGVFKSW
AVTRGPSLDSKDKRLAVEVEDHPLEYGDFEGTIPKGQYGGGTVLLWDRGYWEPEGTKSPQ
EALEEGDLKFALDGKKLHGSFVLVRMKNDRDGGKRNNWLLIKHRDDHSVDGNGDAILKEA
ASVASGRTMEAIASGKGRKPKPFMTEGSDAAADATWESNRNGSAAPTTRKRGTPAASSEA
TMPDFIPPQLCESVARPPSDAGWVHEIKFDGYRIQARVKDGDATLRTRKGLDWTKKYTAI
AKAFSALPDVIIDGEICALDDHGAPDFAALQAAQADGKTGDLVYFAFDLLFEAGQDWRDR
PLTERKARLQSILDDAGGDPRLRYVDHFETGGDAVLKSACKLSLEGIVSKQSNATYRSGR
TDMWVKAKCRAGHEVVIGGWSKTNGKFRSLLVGVFREDHFIYVGRVGTGYGAAKVKSLLP
RLEALRAEKSPFTGRNMAKKVDPDVEWVKPELVAEIEFEGWTADGLVRQASFKGIREDKP
ALEVEAEKPAKPETTDVPDPEKQARSIGKRRGAKAEIMGVVLSNPDKPLWPDAGDKRPVT
KLHLAEYYQSVGPWLLDHIKGRPCSIIRAPDGIGGEQFFQRHAMQGASNLIELVTVSGDR
KPYLQIDRVEGLIAVAQIAALELHPWNCAPGNPDVPGRLVFDLDPGPDVPFSVVVAAAKE
MRERLEALDLVCFCKTTGGKGLHVVTPLATSKKSKLTWSEAKAFAHDVCQIMANDHPDRY
LVKMAKKLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLAWGDVRADLDPKRFTV
RTVPALLEKTDAWADYLDGERSLEKAIKLLGKSVKAAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacggcaagctctcccgttacacgtccaaacgcgacttcaagctcacacaggag
ccaagcggaggcggcgaagtcaatgcgtcgaacaggcttcgcttcatcgtccaaaagcac
gatgcttcaaggctgcactacgatctccggctggaactcgacggcgttttcaaatcctgg
gcggtgacgcgggggccctcgcttgattcaaaggacaagcgccttgcggtcgaggtcgaa
gatcatccgctcgaatatggcgacttcgaaggcacgatcccgaagggccagtatggcggt
ggaaccgtgttgctgtgggatcggggatattgggaaccggagggtaccaaatcccctcag
gaggcgcttgaggagggcgatctcaaattcgcgttggatggcaagaaactgcacggcagc
ttcgtgctcgtgcgcatgaagaatgaccgggacggcggcaagcgcaacaactggttgctg
atcaagcatcgcgacgaccactcggtagatggaaacggtgacgcgatcctcaaggaagca
gcctcggtggcgtcgggccgtaccatggaggcaatagcctcgggaaaaggacgcaagccc
aagccgttcatgacggagggttctgacgcggcagcggacgcaacttgggagagcaatcgc
aacggctctgcagcgccgactacgcgcaagcgaggaacgcctgccgcctcaagtgaagcg
acgatgccggacttcatccctccacagctttgcgaaagcgttgcgcgtcctccttctgac
gctggatgggtgcatgagatcaagttcgatggctatcgcattcaagcccgggtcaaggac
ggagatgcgacgctgaggacccgcaagggtcttgactggacgaagaagtacacggcaatc
gccaaggcattctcggcattgccggatgtgattatcgatggggagatatgcgctctcgat
gatcatggcgcacccgactttgccgcgctgcaggcggcacaggccgatggcaagaccggc
gaccttgtctacttcgcctttgatctgttgttcgaagccggtcaggattggcgcgaccgc
cccttgaccgaacgaaaggcacggctgcagtcgatcctcgacgacgcgggcggtgatccg
aggctcagatatgtcgaccacttcgagacgggtggtgacgcggtcctgaaatccgcctgc
aagctttcgctagagggaattgtgtcgaagcagtccaacgctacctaccgttcggggcga
accgatatgtgggtgaaagcgaagtgccgcgccggccacgaagtcgtcatcggcggttgg
tcgaagaccaacggaaaattccgctcgctgctcgtaggtgtgttccgggaggaccatttc
atttatgtcggccgcgtcggcacagggtacggagcggcaaaagtgaagtcgctgctgccc
cgactcgaggcacttcgcgccgaaaagtcgcccttcaccggtaggaacatggccaagaag
gtcgatcccgatgtcgaatgggtgaaacccgaactcgtggcggagatcgaattcgaaggc
tggactgccgacggtctcgtgcggcaggcttcgttcaaaggtattcgtgaagacaaacct
gccctggaagtcgaggcggagaagccggccaaacctgaaaccacggacgttcccgatccc
gagaaacaggcgcggagcatcggcaagcgacgtggagcgaaggccgaaatcatgggtgtt
gttttgtccaatccggacaaacctctgtggccggacgccggcgacaagaggcctgtcaca
aagcttcatcttgccgagtattaccagtcggtcggtccatggctgcttgatcatatcaag
gggaggccatgttcgatcatccgcgcccctgacggcattggtggagaacagtttttccag
cgccatgcaatgcaaggcgcgtcgaatctgatcgaattggtaacggtttcgggcgatcga
aaaccctatctgcaaatcgaccgggtggagggattgatcgccgtcgcccagatcgctgcc
ctcgaactccatccatggaattgcgcacctggaaatccggacgttccaggacggctggta
ttcgatctggatcccggccccgatgtgccattctcagtggtggtcgcggcagcgaaggaa
atgcgggaacgtctcgaagcgctggacctcgtctgcttctgcaagaccacgggcggcaag
ggcctgcacgtcgtcacgccacttgcgaccagcaagaagagcaagctcacctggagcgag
gcaaaggcattcgcccacgatgtctgccagataatggccaatgatcacccggaccgctat
ctcgtcaagatggctaagaaactgcgcaacgggcggatctttctcgattatttgcgcaac
gatcgcatggctaccgcggtggcgccgctctcgcctcgggctcgtcctggcgcaactgta
tccatgcccttggcgtggggggacgtaagggccgatctcgaccccaagcgttttaccgtg
cgaacggtccccgcacttctcgaaaaaaccgacgcttgggcggattatctcgatggagaa
cgttcattggaaaaggccatcaagcttctgggaaagtccgtgaaagcagcagcatga
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