Proteus penneri: I6G31_02785
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Entry
I6G31_02785 CDS
T07624
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppee
Proteus penneri
Pathway
ppee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6G31_02785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppee03400
]
I6G31_02785 (mfd)
Enzymes [BR:
ppee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6G31_02785 (mfd)
DNA repair and recombination proteins [BR:
ppee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6G31_02785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
MFD_D3
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPT34359
LinkDB
All DBs
Position
574582..578031
Genome browser
AA seq
1149 aa
AA seq
DB search
MSSEYRYQLPIKQGDTRQLGQLTGAACALECAEIIKRHSGLVVLVTRDMQNALRLQDEIR
QFCDFPVETLSDWETLPYDSFSPHQEIISNRLSTLYRIPSLLKGILILPVNTLMQKVCPT
DYLASHALIMQKGEILSRDNLRKTLDEAGYRHVEQVLEHGEYATRGALLDLFPMGSEFPY
RIDFFDDEIDSLRTFDVDTQRTLAEVDQINLLPAHEFPTDANAIELFRSQWRERFDVRRD
PEHIYQQVSKHILPTGIEYWQSLFFEQPLSNLFAYFPKNTLIVTQDLQDFAEKFWQDINQ
RFESRRVDPMRPLLPPDDIWLSVDKFNKELKQWPRIQLKTETLPEKAGQTNLGYQPLPDL
SINAQSKSPLDNLRRFQEQFSGSIIFSVESEGRRETVQELLSRIKIAPKQIIELSDAQEK
GAYFIIGAAEHGFIDSHRQLAMICESDMLGERINRRRQDNRRTINTDTLIRNLAELSIGQ
PVVHLQHGVGRYQGMTTLEAGGVKAEYLMLSYAGNDKLYVPVSSLHLISRYSGGADENAP
LHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQREVKTGFAFKMDKEQYQTFRQSFPFET
TPDQEMAINAVLSDMCQAISMDRLVCGDVGFGKTEVAMRAAFLAVNNNKQVAILVPTTLL
AQQHFDNFRDRFANWPVNIEMISRFRSAKEQQQITEKLAEGTIDIVIGTHKLLQPNIQWK
DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLSVKTFVREYDDLVVREAILRETLRGGQVYYLYNDVENIEKARERLAALVPEARIGIG
HGQMRERELERVMNDFHHQRFNVLLCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTKDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE
EQSGQMNTVGFSLYMELLESAVEALKEGREPSLEDLTNQQTEIELRMPVLLPDDYIPDVN
VRLSFYKRIASAINLTELNDLRAELIDRFGKLPDAGRYLLRNAAIRLSAVNLGITRIEAH
DKGGFVEFGEKNKVDPGYLISLLQEQPAIFRLDGPSKLKFITDLTEREKRLTFIDDMLSA
FNEHKITSL
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaatatcgttatcaacttcctataaaacaaggggatactcgtcagctaggt
caactgactggtgccgcttgcgctctagaatgtgcagagatcatcaaacgtcactctgga
ttagtcgttcttgttactcgtgatatgcaaaatgcattgcgtttacaagatgaaatccgt
cagttttgtgattttccagtagagacattatcggattgggaaacgctgccatacgacagt
ttttcacctcaccaagaaattatctcaaaccgcctttctacgctataccgtattccatca
cttctcaagggaattttaatcttacccgtcaatacgttaatgcagaaagtctgccctacg
gattatctcgcaagtcatgcgttgataatgcaaaaaggagagatactttctcgtgataat
ttacgtaaaacattagatgaagcaggatatcgccatgtagagcaagtattagaacacggt
gaatatgcaacacgcggtgcattattagacttatttcctatgggaagtgaatttccttat
cgtattgattttttcgatgacgaaatagatagcctgcgcacttttgatgtcgatacacag
cggacattagcagaagttgatcaaattaatttactgcctgcccatgaattcccaacagat
gcaaatgcgatagaacttttccgtagccaatggcgtgaacgatttgatgtaagacgtgat
cctgaacatatttatcagcaagtcagtaaacacatattgccaacgggaattgaatattgg
caatcgctgttttttgaacagcctttatctaacttatttgcttatttccctaaaaacaca
ttgatagtgacgcaagatctacaagattttgcagaaaagttttggcaagacatcaaccag
cgttttgaaagccgtcgcgttgatcctatgcgaccgctgttaccgcctgatgatatttgg
ctcagtgttgataaatttaataaagaacttaaacagtggccacgaattcaacttaaaaca
gaaacattgccagaaaaagcaggacaaactaatttaggttatcaaccacttcctgattta
tcgatcaacgcgcaaagcaaatcccctttagacaatctacgtcgattccaagaacaattt
tctggcagtattattttctctgttgaaagtgaaggacgacgcgaaaccgtacaagaactg
ttatcacggataaaaattgcccctaaacagatcattgagttatcagatgcccaagaaaaa
ggagcctattttattattggtgcagctgagcacggttttattgatagtcatcgtcaatta
gctatgatctgtgaaagcgatatgttaggcgagcgaattaatcgtcgtcgtcaagacaat
cgccgaacaattaatactgataccttaattcgcaaccttgctgaattaagcataggtcaa
ccggttgttcatcttcagcatggtgttggtcgctatcaaggcatgacaacactagaagcc
ggtggcgttaaagctgaatacttgatgttaagttacgcaggtaatgacaagctttatgtc
cctgtttcatccttgcatttaatcagtcgttattctggtggcgcagatgaaaatgcgcca
ctacacaaattgggtggcgatgcatgggtaagagcgcgccaaaaagccgctgaaaaagtg
cgtgatgtcgcagcagagttattagatgtttatgctcagcgtgaagtaaaaacaggcttt
gcctttaaaatggataaagagcagtaccaaacattccgccaaagctttccttttgaaaca
acacctgatcaagaaatggcgatcaatgctgtccttagcgatatgtgccaagctatttca
atggatagactcgtctgtggcgatgtcggatttggtaaaacagaagtggcaatgcgtgct
gcatttcttgcagttaacaacaataaacaagtcgccattttagtgccgaccaccttattg
gctcagcaacattttgataatttccgtgatcgttttgctaattggcccgttaacattgag
atgatctcacgctttcgtagtgcaaaagagcaacagcaaatcacagaaaaactggctgaa
ggaacgattgatattgtcattggtacacataaactccttcagcctaatattcaatggaaa
gatttagggctattaattgtcgatgaagaacaccgttttggtgttcgtcacaaagaacga
ataaaagccatgcgcgcaaatgtcgatattttaacgctaacagcaacacctattcctcgt
acgttaaatatggcaatgagtggtatgcgtgatctttctatcattgcaacaccaccagca
cgtcgcttatccgtaaaaacctttgtacgggaatatgatgacttagtggtacgtgaagct
atcttgcgtgaaacattgcgtggcggacaagtttattacttgtataacgatgttgagaat
atcgaaaaagcccgagagagattggctgcgctcgttcctgaagcgcgtattggtattggt
cacggacaaatgcgtgaacgagaacttgagcgtgtgatgaatgatttccaccatcaacgt
tttaatgtgttactttgcaccacaattattgaaacaggtatcgatatacccagcgcaaac
accattattattgaacgtgcagatcactttggtttagcgcaattacatcagttacgtggt
cgtgtaggccgttctcatcatcaagcttatgcttatttgttgacaccacatcctaaagcg
atgacaaaggatgctcataagcgtttagaagcgattgcttcactggaagatctaggtgca
ggttttgcattagcaactcatgatctagaaattcgaggcgccggtgaattattaggtgaa
gaacagagcggtcaaatgaataccgtcggtttctcgctttatatggaattgctagaaagt
gcagtagaagcgcttaaagaggggagagaaccatcacttgaagatctcaccaatcaacaa
actgaaattgaattaagaatgcctgttttattgcctgatgattacatccctgatgtaaat
gtcagactttcattctataaacgaattgccagtgcgatcaacttaacagagcttaatgat
ctaagagcagagttaatcgatagatttggtaaactacctgatgcagggcgttatctacta
cgtaatgcagctattcgcttaagtgcagtgaacttggggattactcgaattgaagcccat
gataaaggtggatttgttgagtttggtgaaaagaacaaggttgatccgggatatttaatc
agcttacttcaagagcaacctgctattttccgtttagatggcccatcaaaactgaagttt
attacagatttaactgagcgtgaaaaacgactcacttttattgatgatatgttaagtgca
tttaatgaacacaaaataacctcactttag
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