Proteus penneri: I6G31_11170
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Entry
I6G31_11170 CDS
T07624
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppee
Proteus penneri
Pathway
ppee03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppee00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6G31_11170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppee03021
]
I6G31_11170 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppee03400
]
I6G31_11170 (rpoC)
Enzymes [BR:
ppee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6G31_11170 (rpoC)
Transcription machinery [BR:
ppee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6G31_11170 (rpoC)
DNA repair and recombination proteins [BR:
ppee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6G31_11170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
QPT32689
LinkDB
All DBs
Position
2424235..2428461
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERGQILTEEQYLDALEEFGDEFDAKM
GAEAVQNLLQSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFMQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDCINAKGEGMVLSGPKEAERVYRAG
LASLHARVKVRITEEIKDGEGNITTETSLKDTTIGRAILWMIVPKGLPYALVNQPLGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTTEGVMMTPVIEGGDVKEPLRERVL
GRVAAEDILKPGTADILVPRNTLLNEKLCDLLEENSVDSVKVRSVVTCNTDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNKGTLKL
FNAKFITNTAGKLVITSRNTELRLIDEFGRTKESYKVPYGAQLAKGDGEAVNGGETVANW
DPHTMPVVSEVSGIIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALRI
TDAQGNDVLIPNTDMPAQYFLPGKAIVQLDDGITINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIENAGSSEFLEGEQVEYARVKVSNRILEEEGKVPATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMKRRQSQLPTD
ETETTISADEASANLAELLNAGFGGLKD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcacctgatatgatccgttcatggtcatttggtgaagttaaaaag
ccagaaacaattaactaccgtacgttcaagccagaacgtgacggtcttttctgtgcccgt
attttcggaccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtttaaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgaa
cgtatgggtcacatcgaattagcttctccagttgctcacatttggttcttgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccactgcgcgatattgaacgtgtactgtat
ttcgaatcttacgttgttgttgaaggcgggatgactagccttgaacgtggtcaaatctta
acagaagagcaatacctcgatgcattagaagagttcggtgacgaatttgatgcgaagatg
ggtgctgaagctgttcagaacctcttacagagcatggatctggaacaagagtgtgaaacg
ctacgtgaagagttaaacgaaactaactctgaaactaaacgtaagaaactgactaaacgt
atcaagttacttgaagcgttcatgcaatcaggcaataaacctgagtggatgatcttaact
gtactgcctgtgttaccaccagacttacgtccactggttccacttgatggcggtcgtttt
gcgacatctgacctgaacgatttatatcgtcgtgtgatcaaccgtaacaaccgtttaaaa
cgtctgcttgatttagcagcaccagatatcatcgtacgtaatgaaaaacgtatgttgcaa
gagtctgtggatgcgttattagataacggtcgtcgtggtcgtgcgattacaggttcgaac
aaacgtcctctgaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacctgttaggtaaacgtgttgactattctggtcgttctgtaatcaccgttggtccatac
ctgcgtctgcatcagtgtggtctgccgaagaaaatggcgcttgagttattcaaaccattt
atttacggaaaactggaaacccgtggtttagcgacaacaatcaaagccgctaaaaaaatg
gttgagcgtgaagaagcggttgtttgggatatcttagatgaagttatccgtgaacatcca
gtgatgctaaaccgtgcaccaacacttcaccgtttaggtattcaggcatttgaaccaatc
cttatcgaaggtaaagctattcagttacacccactcgtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggttcacgtaccattgacattagaagcacagctagaagct
cgtgcgctgatgatgtcaacaaataacatcctgtctccagcaagtggtgacccaatcatc
gttccttcacaggacgttgtattaggtctttactacatgactcgtgactgcatcaatgcc
aaaggtgaaggcatggtgctaagtggccctaaagaagctgaacgcgtttatcgcgctggt
ttagcctctttacacgcacgcgttaaagtacgtatcactgaagagatcaaagatggcgaa
ggtaacatcaccactgaaactagcttaaaagataccactatcggccgagctattttatgg
atgatcgtaccaaaaggtctaccttacgcgctggttaaccaaccattaggtaagaaagca
atttctaaaatgctgaatacctgttatcgcgtattaggcttgaagccaaccgttattttt
gctgaccaaatcatgtataccggttttgcttacgcagcacgttcgggtgcttcagtaggt
atcgatgacatggttatccctgcgaaaaaagcagagatcattgcagaagcagaagcagaa
gttgcagaaattcaggaacagttccaatccggtctggtaacagcgggcgaacgttacaac
aaagtcatcgatatttgggctgcggcgaatgagcgcgtagcaaaagcgatgatggaaaac
ctgtctactgaaaccgttattaaccgtaatggtgaagaagaacaacaagtatctttcaac
agcatctttatgatggctgactccggtgctcgtggttctgcagctcagatccgtcagtta
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgagacaccaatcaca
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtcttgcggataccgcactgaaaacagcaaactccggttacttgactcgtcgttta
gttgacgttgcacaagacttagttgtcacagaagacgactgtggtacaaccgaaggtgtt
atgatgactccggttatcgaaggtggagatgttaaagagccactgcgtgaacgtgtatta
ggccgtgtagctgcagaagatattctgaaaccaggtactgccgatatccttgttccacgt
aacaccctgttaaacgaaaaactgtgtgacttgttagaagaaaactcagttgacagcgtg
aaagtacgttcagttgtaacctgtaacacagacttcggtgtatgtgctaaatgttatggt
cgtgaccttgctcgtggccatatcatcaacaaaggtgaagctatcggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagtattcaagtacgtaacaaaggtactctgaagctg
ttcaatgcgaagttcattaccaatactgcgggtaaattagttatcacttctcgtaacaca
gaattacgtttaattgacgaattcggtcgtacgaaagagagctacaaagtgccttacggt
gctcaattagcgaaaggtgatggtgaagcggttaacggtggcgaaactgttgctaactgg
gatccacatacaatgccagttgtgagtgaagtatctggtatcatccgttttgctgacatg
gttgatggtcaaactatcacacgtcaaacagatgaattaacaggtctttcttcactggtt
gttctggattcagcagagcgtacaggtagcggtaaagatttacgtccagcattacgcatc
actgatgcacaaggtaatgacgtattaattccgaatactgatatgccagcacagtacttc
ctgccaggtaaagcaattgttcagttagacgatggcattacaattaacgcaggtgacact
ttagcgcgtattccacaagaatcaggcggtactaaagatatcaccggtggtctgccacgc
gttgctgacctgtttgaagctcgtcgtccgaaagagcctgcaatccttgctgaaatcagc
ggtattgtatcgttcggtaaagagactaaaggtaaacgtcgtctagttatttctccatta
gacggtagcgatgcatacgaagagatgatccctaaatggcgtcagcttaacgtattcgag
ggtgaggttgtggaacgcggtgatgttatctccgatggtccagagtcaccacacgacatt
ctacgcttacgtggtgttcatgcggttactcgctatatcactaacgaagtacaggaagtt
taccgtttacaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctacgtaaagttaccattgagaacgcaggaagctctgagttccttgaaggtgaacaggtt
gaatacgctcgcgttaaagtgtcaaaccgtattctggaagaggaaggtaaagtaccagca
acatatgctcgtgacctgttaggtattacgaaagcatctctggcaactgaatctttcatc
tctgctgcatcgttccaagaaacaactcgtgttctgactgaagcggcggtagcaggtaaa
cgtgacgaattacgtggcttgaaagagaacgttattgttggtcgcttgatcccagcaggt
acagggtatgcgtatcaccaagatcgtatgaagcgtcgtcaatcacaactgccgacagat
gaaactgaaacaacaatcagtgctgatgaagcctctgcgaacttagcagaattactgaat
gctggttttggtggattaaaagactaa
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