Pseudomonas pergaminensis: KUA23_02710
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Entry
KUA23_02710 CDS
T08563
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUA23_02710 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppeg03019
]
KUA23_02710 (rnr)
03016 Transfer RNA biogenesis [BR:
ppeg03016
]
KUA23_02710 (rnr)
Enzymes [BR:
ppeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KUA23_02710 (rnr)
Messenger RNA biogenesis [BR:
ppeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KUA23_02710 (rnr)
Transfer RNA biogenesis [BR:
ppeg03016
]
Prokaryotic type
tRNA degradation factors
KUA23_02710 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
USW01683
UniProt:
A0ABD7TJ21
LinkDB
All DBs
Position
611444..614080
Genome browser
AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRGHETIVGRYFEEGGIGFVVPDNPKVQQEV
LITPGRNANAKVGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVVKEARKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEELSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILEQPKTSEAKALRGEYGHVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA
SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVQVMRVDLDERKIDFGMPDKPAEAPGSRKKRGSESAAPTSKGKGAPAKAA
AAEPAPAKAGRRSSAKDKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGK
SHGAEKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgcgagcagttggttgaagaattcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgacgcacaactgatctacacccgccgcggcacctat
gcgcccgtggacaagctcgacctgatcctcggccgcatcgccggccaccgtgacggcttc
ggcttcctgatcccggacgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgtgccctggcccgtgtttccggcctggaccgtcgtggtcgc
cgtgaaggcgtgatcgtcgaagtggtgtcccgtggtcacgagaccatcgtgggtcgctac
ttcgaagaaggtggcatcggttttgtcgttccggataaccccaaggtgcagcaggaagtg
ctgatcaccccgggccgcaacgccaacgccaaggtcggtcagttcgtcgaggtgaaaatc
acccactggccaaccccgcggttccagccgcagggcgatgtgatcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgttgcgctacgcacctacgacattcctcacgta
tggcctgaagccgtcgtgaaagaagcgcgcaagctcaagcctgaagtcgaggagaaggac
aaggagaagcgcatcgacctgcgccatctgccgttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgccgtctactgcgaagccaagccgggcaagctgcgcctgttctcc
ggcggctggaagttgttcgtggcaattgccgacgtctccagctacgtgaagatcggttcg
gctctggacaacgaagcccaggtgcgtggcaactcggtgtacttcccggagcgcgtgatc
ccgatgctgccggaagagctgtccaacggcctgtgctcgctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgactatctcgaaaaccggcgaaatgaccgattaccagttc
tacgaagcggtgatccactcccaggcccgcctgacctacaacaaggtcagcaccatcctg
gaacagccgaaaaccagcgaagccaaagccttgcgcggcgagtacggccatgtcgtgccg
cacctcaagcagctttacgcgctgtacaaggtgttgttgggtgcccgtcacgtgcgtggc
gcgatcgattttgaaacgcaggaaacccggattgtcttcggttccgaacgcaagatcgcc
gcgatcaccccaacaacgcgcaacgacgcgcacaagctgatcgaggagtgcatgctggcg
gccaacgtggccacggctgaattcctgaagaagcacgagatccctgcgctataccgtgtg
cacgacggtccgccgccggagcgcctggaaaaattgcgcgccttcctcggcgagctcggt
ttgtccctgcacaagggcaaggacggcccgacgccgaaggactaccaggctctgctggcc
agcatcaaggatcgtccggattaccatgtgatccagaccgtcatgctgcgttccctgagc
caggctgtgtacagcgccgacaaccagggccacttcggtctgaattacgaggcgtacacc
cacttcacctcgccgatccgccgttacccggacctgctcacgcaccgtgcaatccgcagc
gtgatccactccaagcagaacactccgcacgtcaagcgtgccggtgccatgaccattccg
aaggcacggatctatccgtacgacgaagcggccctggagcagttgggcgagcaatgctcc
atgagcgagcgccgtgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtaggcgagtcgttcccgggtgtgatcactgccgtgaccggcttt
ggtttgtttgtggaactgaccgacatctacgtcgaaggcttggtgcacgttaccgccttg
ccgggtgactactaccacttcgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtctgggtgacaccgtggaagtgcaggtcatgcgcgtcgacctcgacgag
cgcaagatcgacttcggcatgccagataaacccgctgaagcgccgggcagtcgtaaaaaa
cgcggcagcgaaagcgcagcgccgacctcgaagggcaaaggcgcgcctgcgaaagcagct
gccgccgagcctgcaccggccaaggccggtcgccgttcgtcggccaaggacaaggcccct
gaggcttaccgcccaagcgacgccgcggcgaaaaacgccgagctgcgcaagagccgcgag
ttgaagcagcagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaag
tcccacggggcggaaaagccgtcgagcaagccaagtaaacaccgtaaaggcccgcccaaa
gcgggttcggcccccgccaaaagcggcgggtcgcgcaaacctaaggccaagtcatga
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