Pseudomonas pergaminensis: KUA23_03965
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Entry
KUA23_03965 CDS
T08563
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
ppeg
Pseudomonas pergaminensis
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_03965 (phrB)
Enzymes [BR:
ppeg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
KUA23_03965 (phrB)
DNA repair and recombination proteins [BR:
ppeg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
KUA23_03965 (phrB)
Prokaryotic type
KUA23_03965 (phrB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Fer2_4
Motif
Other DBs
NCBI-ProteinID:
USW01899
UniProt:
A0ABD7TJM4
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All DBs
Position
complement(887108..888553)
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AA seq
481 aa
AA seq
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MHLIWLRTDLRLHDNTALAAASQRGPIAAVYLITPEQWLAHDDAPCKVDFWLRNLQVLSK
TLGELNIPLLIRTAATWDQAPDVLSQLCHELSVASVHVNEEYGIHESRRDAAVAKALEAQ
GVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRRVAAPKAQAVLTLK
SDPVPTAVDGFEPPSEALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTSQLS
AYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSRHRA
FRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDAEGVFIK
HWLPELAALNKKDVHNPEAAGGLFGVADYPRSIVDLKKSRERALAAFRSLPSRQAAGGEY
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgatctggctgcgcaccgacctgcgcctacacgacaacaccgccctggccgcc
gcaagccagcgaggcccgattgcggcggtgtacctgatcacgcccgaacagtggctggcc
cacgacgatgcgccgtgcaaagtggatttctggctgcgcaacctgcaggtgctgagcaaa
acgctcggcgagctgaacattcccctgctgatccgcaccgcagccacctgggatcaggcg
cccgacgtgctgagccagctgtgccacgagctgtcggtggcgtcggtgcacgtcaacgag
gaatacggcatccacgaaagccgtcgcgatgcggccgtcgccaaggccttggaagcacaa
ggcgtgagctttcacagctacctggaccaactgttcttccagcccggcagcgttctgacc
aaaaccggtacgtatttccaggtgttcagccagtttcgcaaggtctgctacacccgcctg
cacagcgccctgccccgcagggtcgcggcgccaaaagcgcaggctgtgctcacgctcaaa
agcgatccggtgcccacggcagtcgacggtttcgagccgcccagcgaggccctacgggcg
ctgtggccggcgggtgaggacgaggcccgtcgccgtctcgatgcctttgccgatcagcaa
atcagttactacaaggacgagcgcgacttccccgccaaacccggcaccagccagctctcc
gcctaccttgcggcgggcgtggtttcgccgcgacagtgcctgcatgccgcactgcaaacc
aatggcggcgaattcgaaagcggcgacatgggcgccatcacctggatcaacgagttgctg
tggcgcgagttctacaagcacattctggtgggctaccccagggtatcgcgccaccgcgcg
ttccgccccgagaccgaagccgtggcctggcgcaacgcacccaaggacctcgctgcctgg
caggaagcccgcaccggcctgccgattatcgatgccgccatgcgccaactgctggaaacc
ggctggatgcataaccgcctgcgtatggtggtggcgatgtttctgaccaagaacctgctg
atcgactggcgcgaaggcgagcgcttctttatgcgtcacctgatcgacggcgacctggcg
gcgaacaatggcggctggcagtggagctcatccaccggcaccgactcggcgccgtacttc
cggattttcagcccgttgagtcagtcggagaagtttgacgccgaaggcgtgtttatcaag
cactggctgccggaactggccgcgctgaataaaaaggatgtgcacaaccccgaagccgcc
ggcggcttgttcggcgtggctgactacccgcgctcgatcgtcgacctgaaaaaatcccgt
gaacgtgcgctggccgccttccgcagcctgccctcgcgccaggccgcagggggtgagtat
gagtga
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