Pseudomonas pergaminensis: KUA23_07675
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Entry
KUA23_07675 CDS
T08563
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppeg
Pseudomonas pergaminensis
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppeg03016
]
KUA23_07675 (rnd)
Enzymes [BR:
ppeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KUA23_07675 (rnd)
Transfer RNA biogenesis [BR:
ppeg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KUA23_07675 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
USW02588
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All DBs
Position
1701020..1702153
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AA seq
377 aa
AA seq
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MAIDIHWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQAVLDIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVYIRLRPQLSDDKYAWV
LEDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRII
REHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRAGSVPMDQWPPAVAEPL
PVDAAALIKQLRALGQAEAERLDMAPELMLRKKTLEALVKSGYPDGPYKLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggatctgcgacaacgatagcctcggccagcattgcgccgaa
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttttat
cccattgccgggctgatccagatcggtgatggcgttcgcgcttacctgatcgaccccctg
accatcgacaactggcaacccctggccgccttgctggaaaacccggcggtgatcaaggtg
gtgcacgcctgcagcgaagacctcgaagtgttgctgcgcctgaccggcagcctgccggtg
ccgttgttcgacacccaattggcggcggcttacctgaacctcggtttctccatgggctat
tcgcgcctggtgcaagccgtgctggatatcgaactgcccaagggcgagacccgttcggac
tggctgcagcggccattgtccgagacgcaggtcagctacgccgccgaagacgcggtgcac
ctggccgaggtgtacatccgcctgcgcccgcagctgtcggatgacaaatacgcctgggtg
ctggaggacggcgccgaattggtcgccaacctgcgccgcgaagtcgacccttacgaggtg
tatcgcgacgccaagctggcgtggaagctatcccgcgcccagctcgccgtgctgcgtgaa
ctgtgcgcctggcgcgagcaacaagcccgtgcccgggacctgccgcgcaaccgcatcatt
cgcgaacactcattgtggcccctggccaaatcccagccggataacctcgccgcgctgggc
aagatcgaagacatgcacccgcgtaccgtgcgtcaggacggtcagttcctgctggacctg
atcaagcgtgccggcagcgtgcccatggaccaatggccgcctgccgttgccgaaccgttg
ccggtggatgccgccgcactgatcaagcaactgcgcgcccttggccaagcagaggccgaa
cgcctggacatggcgccggaactgatgctgcgcaagaaaaccctcgaagccctggtcaaa
agcggctatcccgatgggccttataaattgccagactcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggccactgccggagaacagccttga
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