Pseudomonas pergaminensis: KUA23_08980
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Entry
KUA23_08980 CDS
T08563
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUA23_08980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppeg03019
]
KUA23_08980
03009 Ribosome biogenesis [BR:
ppeg03009
]
KUA23_08980
Enzymes [BR:
ppeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KUA23_08980
Messenger RNA biogenesis [BR:
ppeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUA23_08980
Ribosome biogenesis [BR:
ppeg03009
]
Prokaryotic type
rRNA helicases
KUA23_08980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
USW02832
UniProt:
A0ABD7TML7
LinkDB
All DBs
Position
1970367..1972040
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggcaaaaccgccgcattc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccaggcgtaactgttgtggccgtttacggcggcgcgcctatgggcccgcaactcaaa
gcaatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccgcccacc
cgtcagaccgtattgttctcggccaccttgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggcaagcgccctggaagccaaaggctacaaggccgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgctgcccgtggtcttgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgcgctctgctgctggtcactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgttaccggccagaaagtcgctgaagtgcgcctgccggatgcccaggcagtcctc
gatgcccgcatcaagaaactgaccaacagcctggcgccattggtggctgacgctgaatcg
acccacggcgaactgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gccgcagccttgctgcgcaaagctaccaacggtcaagccctgaccctggcagccatcgag
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgttccggc
gaccgtccagaccgtggtgatcgtgagcgtcgcgctccggtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgtatccaggtccgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctcaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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