Pseudomonas pergaminensis: KUA23_21785
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Entry
KUA23_21785 CDS
T08563
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUA23_21785 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppeg03019
]
KUA23_21785 (recQ)
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_21785 (recQ)
Enzymes [BR:
ppeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUA23_21785 (recQ)
Messenger RNA biogenesis [BR:
ppeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUA23_21785 (recQ)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KUA23_21785 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
GerE
HTH_29
Motif
Other DBs
NCBI-ProteinID:
USV99642
UniProt:
A0ABD7TDG4
LinkDB
All DBs
Position
complement(4835317..4837443)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTTMAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggcacaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccagtggcggtgacgcactggtactgatgcct
accggtggcggcaagtcgttgtgcttccaggtgccggcgctgttgcgcaatggcttggct
gtggtggtgtcgccgctgatcgcgctgatggacgatcaggtcgccaccctcgaagagctg
ggcgttgccgcggcgtccttgaactccaccctcagcgccgagcagcaacgcgacctggcc
gcgcggatcaagcgcggtgaagtgaagatgctctatctggcccccgagcgcttggtgcag
ccgcgcatgctggcctttttgcagagcctggaaattgccctgttcgccatcgacgaagcc
cactgcgtgtcgcaatggggacacgattttcgccgcgaatacctgcagctcggccaactg
gcagagctgtttcccgatgtgccgcgcattgccctgaccgccaccgccgacaagcgcacc
cgcgaagaaatcgtcgagcgcctgcatctgcagaacgccgagcgcttcctgtcgagtttt
gaccggccgaatatcttctaccgcatcgtgcccaaggagcagccgcgcaagcaattgctg
gcgttcctctccgagcggcgcagcgatgcgggcattgtctattgcctgtcgcgcaagaag
gtcgatgaagtggccgcgttcctctgcgagcagggctacccggcgctgccgtaccacgcc
ggcctgcccaacgaaacgcgttcggctcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggctaccatcgcgttcggcatgggcatcgacaaatccaacgtgcgtttcgtg
gcgcacatggatttgcccaaatccctggaggcgtactaccaggaaaccggtcgcgccggc
cgggatggcctgcctgcggatgcctggatggtctacggcctgcaggatgtagtgatgctc
aagcagatgttgcagaactccgaaggcgacgagcgtcacaagcgccttgagcagcacaag
ctcgatgcgatgctctcgctgtgcgaggaaacccgttgccgccgccagaccttgctggcc
tacttcgacgaagacatgcctgaaccttgtggtcattgcgataactgcgtcgacggtgtg
cagacctgggatgccaccgagccggcgcgtcagggcttgtccgccatctaccgcaccggc
cagcgttatggtgtcggtcacctggtggatgtactgctgggcaaggacaacgagaaagtc
cgcagcttcggccacgagaaactctcggtctacggcgtcggcaaggcccgcgctgaaggc
gagtggcgctcgctgttccggcagatggtcgcgcgcggcctggtggacatcgacatcgag
ggctacggcgggttgcgcttgaatgacagttgccggccgttgctcaagggcgaagtcagc
ctggaactgcgccgcgacctcaagccgcagaccaccgccaagagcagcaccagccaagcc
agccaactggtgcgtggcgaagagcgcgagcagtgggaagccttgcgcaccctgcggcgc
aaactggcgcaggaacacagcgtgccgccgtacgttattttccccgactccaccctgctg
gagatgctgcgcgagcaacccaccaccatggccgagatggcgcgcgtcagcggcgtgggt
gcgcgcaagctggagcgttacggccaggccttcctcgaagtgctcggcggccaggccgaa
gcgccgaaggaagtcgccgatatccgccacgaactgatcagcctggcacgtgccggcatg
accccgatccagatcgcgggtcaactgcaatgctcggagaaaaacgtctacaccttgctc
gccgaatccatcggcaagcagcaactctcgttggagcaggcgcttgatttgccggaggat
ttgctcggcgaaatccaggacgcgttcctcgacggagaaggcgaattgccaccggtggcg
gagattgcgccgctgtttacgggtcgcgttccggagggggttttgtactgcgtaagggcg
gctttgcagtccgaattcgaaatttag
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integrated database retrieval system
