Pseudomonas pergaminensis: KUA23_21965
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Entry
KUA23_21965 CDS
T08563
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppeg
Pseudomonas pergaminensis
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppeg03009
]
KUA23_21965 (rlmD)
Enzymes [BR:
ppeg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KUA23_21965 (rlmD)
Ribosome biogenesis [BR:
ppeg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KUA23_21965 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltr_RsmB-F
Methyltransf_23
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
DREV
Motif
Other DBs
NCBI-ProteinID:
USV99676
UniProt:
A0ABD7TDM6
LinkDB
All DBs
Position
complement(4873196..4874548)
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AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQIPVGKKQRLIIERLANDGRGIVFFEGRTWFVNGALAGEEV
EARVLGTHGKIVEARTDRVFKASELRRPAPCAHFGRCGGCSVQHLPHAEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKHLEVGFRAVASQDIVAIDECP
VLVQALQPIMQRLPNMLRRLSKPQALGHVELFSGTSIAVLLRHMAPLSEADLHVLKEFCA
FHDAQLWLHGEGQPEPVEADSVLGFRLEQWGLELAYRPGDFVQVNAGVNAAMVAQALEWL
APQPDERVLDLFCGLGNFALPLARQVREVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccaaccgacgggcggcagtcgggccccgcag
atacctgtaggcaagaagcaacgcttgatcatcgagcgtctggccaatgatggccgtggc
attgtgttctttgagggccgcacctggtttgtgaatggcgcgctggccggcgaagaggtc
gaagcgcgggtgttgggcacccacggcaagatcgtcgaggcgcgcaccgaccgcgtgttc
aaggccagcgaactgcgccgtccggcgccgtgcgcgcactttggtcgctgcggcggctgc
agcgtgcagcacttgccccacgccgaacaacttgccctgaaacagcgcatgctcgccgag
caactgtcccgtgtggccggtgtcgaaccgcaagagtgggccgcaccgttgagtgggcca
gagttcggctaccgtcgccgcgcccgcgtggccgtacgctgggatgccaaggcaaaacat
ctggaagtcggtttccgcgccgtggccagccaggacatcgtcgccatcgacgaatgcccg
gtgctggtacaggccttgcaaccgatcatgcagcgcctgccgaacatgctgcggcgcttg
agcaaacctcaggccctggggcacgtggagctgttcagtgggacgtccatcgccgtattg
ctgcgccatatggcgccgttgtcggaggcggacctgcacgtgttgaaagaattctgcgct
ttccatgacgcgcaattgtggctgcatggcgagggccaaccggaaccggtcgaggctgat
tcggtcttgggttttcgattggaacagtggggtctggagctggcttaccggcctggggac
ttcgtgcaagtcaatgccggggtcaacgcggcgatggtcgcccaggctctggaatggctg
gcgccacaacccgatgagcgggtgttggacctgttttgcggcctgggcaattttgccttg
ccactcgctcgccaggtgcgcgaagtggtggcggtggaaggcgtgcagaccatggtggac
cgggcggccgtgaatgccgtcagcaacaatttgcataatgcgcagttttttcaggccgat
ttgtcccagcctttgaccgacgcggaatgggccaaacagggcttttctgcggtactcttg
gacccaccccgtgacggtgccctggaggttgtgcgcaagctcgcgaccctcaaggccaag
cgtctggtgtatgtgtcctgcaacccggccacgctggcgcgggacacggttgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgacatgtttccgcaaaccgcgcat
gtcgaggccatggcgttatttgaagcgggctag
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