Pseudomonas pergaminensis: KUA23_24245
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Entry
KUA23_24245 CDS
T08563
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KUA23_24245 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_24245 (sbcB)
Enzymes [BR:
ppeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KUA23_24245 (sbcB)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KUA23_24245 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KUA23_24245 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KUA23_24245 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
USW00104
UniProt:
A0ABD7TEM1
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All DBs
Position
complement(5342702..5344129)
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AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGIRTDHELNEIGAPVNLYCLPSDDILPHPVACAIT
GITPATLAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGIEWPQQDGRVTLKLERLTEANGIDHGQAHDALSDVR
ATIALARLVREKQPKLYDWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLDLDADALRQRLYTRRDELVEGELPVPLKLVHINRCPVV
APLNVLRAEDRERLHLDMNVYQERALRLTDAQELWRDKLAAIYAEEDFAATADPEQQLYD
GFIGDRDRRLCEQVRAAEPEQLARQQWPFDDHRLPELLFRYRARNFPDTLNDEEQQRWTL
FCQQRLSNPEWGAPNTLEAFKQARQEFIVSATPFQQGVLEQWQEYADSLAARMYL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgattttctggtacgactatgaaaccaccggcatcaacccgcgcagcgatcgg
cccctccaggtagccggcatacgcacggaccacgagctcaatgagatcggcgcgccggtc
aatctttattgtctgcccagcgacgatatcctgcctcacccggtggcctgcgcgattacc
ggtatcaccccggcgacactcgcggaaaaaggcctggccgaggctgatttcatgacccgt
gtgcacgctgaactcgccgcgccgggcacttgtggcgccggttacaacactttgcgtttc
gatgatgagatgacacgctacagtctgtatcgcaattttttcgatccttatgcgcgtgag
tggcagggtggtaacagtcgctgggatttgatcgatgtggttcgaaccgcctatgcgctg
cgcccggaaggcattgaatggccgcagcaggatgggcgcgtcacgctcaagttggagcgc
ctgaccgaagccaacggtatcgaccatgggcaggcgcacgacgcactgtccgacgtgcgc
gccaccatcgctctggcccgactggtgcgtgagaaacaacccaagctgtatgactggctg
tttcagttgcgcagtaaacagcgggtgatggaccaggtgcgcttgctgcaaccgatggtg
catatctccgggcggttttccgccgagcgtcattacctgggggttgtgttgccgctggcg
tggcacccgcgcaatcgcaacgccttgatcgtctgcgacctggggctcgatccgcaaggg
ctgctggaccttgatgcggatgccttgcgccagcgtctttacacacgccgtgacgaattg
gtcgagggcgaactgccggtaccgctcaaattggtgcatatcaatcgctgtcccgtggtt
gctcccttgaatgtgctgcgggcagaagaccgtgaacgtctgcacttggacatgaatgtt
tatcaggaacgggcactgcgactaactgacgcacaggaactttggcgcgataagttagcg
gccatttacgccgaggaagatttcgcggcgactgcagacccggagcaacagctgtatgac
ggttttatcggagaccgtgatcggcgtttatgcgaacaagtccgggcggctgagcctgag
caattagcacgccagcagtggccatttgatgaccatcgtttgcccgaattattgtttcgc
taccgcgcgcgtaacttccccgatacgttgaacgacgaggagcaacaacgctggacactt
ttttgtcagcagcgtttgtcgaacccggagtggggcgcgccgaatacccttgaggcattt
aagcaagcccggcaggagtttattgttagtgcgacgccgtttcagcaaggggtgctggag
cagtggcaggaatatgcggactctctggccgcgcgaatgtatctttag
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