Pseudomonas pergaminensis: KUA23_27345
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Entry
KUA23_27345 CDS
T08563
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KUA23_27345 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppeg03021
]
KUA23_27345 (rpoD)
Transcription machinery [BR:
ppeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KUA23_27345 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
USW00674
UniProt:
A0ABD7TG89
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All DBs
Position
6009956..6011806
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDSEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRGNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttctcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagcggctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccatattctctccgagtacacccgcgttaccaccgaaggtggccgcctg
tccgacgtcctgagtggttacatcgacccggacgacggcatcgcgccgcctgccgccgaa
gtgccgccgcctgtcgatgccaaggctgcaaaagccgacgacgactccgaagacgacgac
gctgaagccagcggcgacgatgaagacgaagttgaaagcggtccagacccgatcatcgct
gcccagcgtttcggtgcggtttccgaccaaatggaaatcacccgcaaggcgctgaaaaag
cacggtcgtggcaacaagcaggcgattgccgagctgttggccctggctgagctgttcatg
ccgatcaagctggtgccgaagcaattcgaaggcctggttgagcgtgttcgcagcgccctt
gagcgtctgcgtgcacaagagcgtgcgatcatgcagctctgtgtccgtgatgcgcgcatg
ccgcgtgccgacttcctgcgccagttcccgggcaacgaagtagacgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcagccggacatc
attcgctgccagcagaagctgaccgcgcttgagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgtatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggtcgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgcatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgattggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagccttaaagaagcgactcgtgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacccgtgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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