Pseudonocardia petroleophila: H6H00_05670
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Entry
H6H00_05670 CDS
T08626
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppel
Pseudonocardia petroleophila
Brite
KEGG Orthology (KO) [BR:
ppel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppel03019
]
H6H00_05670 (hrpA)
Enzymes [BR:
ppel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H6H00_05670 (hrpA)
Messenger RNA biogenesis [BR:
ppel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H6H00_05670 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
AAA_30
T2SSE
TsaE
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QNG53460
UniProt:
A0A7G7MKZ9
LinkDB
All DBs
Position
1138540..1143039
Genome browser
AA seq
1499 aa
AA seq
DB search
MSPSPSRATDARPEAAGPPGSDVQHSHDPAGARRESGSAATGDRSAVGDRIAPGDPAAVS
DRGASGDRGASGDRPSERTRRPRRRRPRGRSTQTGVVQPGAAPPGAAQPDADQPDAGAAS
PGEPGTDPAERDRPRAGAPADGTRARRSRTPGGAPADRGARADGRPADGGRGRRPRADAQ
PTRERRPRTASAEDGATDVPEFSDADITALDERLPELSLRDEHRLARRLDTARRTRDPLA
RNRALAGIAAGVDEGERRTAARRAAVPAITYPETLPVSARREDIAAAIRDNQVVIVAGET
GSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAARIAEELGSEIGDTVGWKVRFTD
QVGENTLVKLMTDGILLAELTGDRMLRQYDTLIIDEAHERSLNIDFILGYLAQLLPRRPD
LKVIITSATIDPERFAQHFASPDRPAPIVEVSGRSYPVEMRYRPVVDPDDPDADPDRDQL
AAIADAVTELRREGPGDILVFLPGEREIRDTADGLAKRQFPGIEILPLYARQTTAEQQRV
FAPKQGSLGRRVVLATNVAETSLTVPGIRYVIDPGLARISRYSRRLKVQRLPIEKVSQAS
ANQRAGRCGRVADGICIRLYAEDDFDARPAFTDPEILRTNLASVVLQMISLELGEITEFP
FVDPPDRRSVDDGLALLHELGALDGKQELTAVGRALAGLPVDPRLGRMLVEADRNGCLRE
VLVIAAALSVQDPRERPTEQRQAADEKHARFAEDGSDFLAFRNLWAYVAERRQELSGSRF
RKTLREEFLHYLRIREWQDLHAQLRSAARNAGMTPNDADASPDAIHTSVLAGLLSQIGLR
EAETKEYLGARGAKFMIFPGSSLAKKGPRWVMAAELVETSRLFARTVARIKPEWVEPLAG
HLVKRSYSEPHWSRKRAAAVAVERVTLYGVPIVVDRTVDYGRIDAEVSRELFIRHALVEG
DWDTRHRFFHANRELLDSAEELENRARRRDLVVDEETLVAFYEERIPADVVSGRHFDTWY
RRAKPALELTEEMVRTAQAAEVDAAAYPDHVEAGGLTLPLSYAFEPGKRDDGVTVDVPVA
ALHQIDPTPFTWQVPGLREDLVTALIKTLPKNLRRNFAPAPDHARAVLARLQAGDEPLLD
GLERELGRMRGVRIPREAWELDRLPEHLTVTFRVVDERGREVTRGTDLEAMRRELAPEVR
AELAAAGVELERTGLTTWSIGTLPREHAIRRGRHTVTGFPGLVDRGTSVDVRVFPLAAER
DPAHHRGARRLLLLDTPSPAKQVQRGLDNSAKLALSRNPHGSVAALLEDCTVCAADALIA
AVGGPPWDERSYLRLQKVFREKLVPTTLQVLHAVRAVLDVRLRVQALLTDTHRTPGVAAG
LADIEAQLADLVGPGFATAAGASRLGDVARYLEAIERRVEKLRVDPVRDDGWTAQVRVAA
DEYAAELAALPPGVEPGPELREIRWMIEELRVGLYAHPMRTRYPISIKRIQKAIDDLPR
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgtccccctcgccctcccgcgccaccgacgcgcgccccgaggccgccggcccgcccgga
tccgacgtgcagcacagccacgatcccgccggtgcacggcgggagagcggctctgccgcc
acgggcgatcggtccgccgtcggcgaccggatcgccccgggtgacccggccgccgtgagc
gaccggggtgcgtccggcgaccggggcgcgtccggcgaccggccgtccgagcgcacgcgt
cgcccgcggcgtcggcggccgcgcggccggagcacgcaaaccggagtcgtccagcccggg
gccgcaccccccggcgccgcccagccggacgccgaccagccggacgcgggcgcggcgagc
cccggcgagccgggcacggatcccgccgagcgggaccgaccgcgtgccggtgcccccgcc
gacggcacccgtgcgcggcgctcccggacgcccggaggagccccggccgaccgcggcgcc
cgtgccgacggcaggccggccgatggcggccgcggtcggcgtccccgggccgacgcgcag
cccacccgtgaacggcgtccccggaccgcctccgcggaggacggcgcgaccgacgtcccc
gagttctccgacgccgacatcaccgccctcgacgagcgactgcccgagctgtccctgcgc
gacgagcaccgcctcgcccggcgtctggacaccgcccgccgcacccgcgaccccctcgcc
cgcaaccgggcactggccgggatcgccgccggcgtcgacgagggcgagcgccgcaccgcc
gcccgccgcgccgccgtcccggcgatcacctaccccgagacgctgccggtcagcgcgcgc
cgcgaggacatcgccgccgccatccgcgacaaccaggtcgtcatcgtcgcgggcgagacc
ggctccgggaagaccacgcagatcccgaagatctgcctggagctcggccgcggcgtccgc
gggctgatcgggcacacccagccgcgacggctcgccgcccgcaccgtggccgcgcgcatc
gccgaggagctcgggtccgagatcggcgacaccgtcggctggaaggtgcgcttcaccgac
caggtcggcgagaacacgctggtcaagctgatgaccgacgggatcctgctcgccgagctc
accggcgaccggatgctgcgccagtacgacaccctgatcatcgacgaggcccacgagcgc
agcctcaacatcgacttcatcctgggctacctcgcccagctgctcccccggcgccccgac
ctcaaggtgatcatcacctcggccacgatcgacccggagcggttcgcgcagcacttcgcc
tcgcccgaccgcccggcgcccatcgtcgaggtctccggccggagctacccggtcgagatg
cgctaccggcccgtcgttgacccggacgaccccgacgccgacccggaccgcgaccagctc
gccgccatcgccgacgccgtcaccgagctgcgccgcgagggccccggcgacatcctcgtg
ttcctgcccggcgagcgggagatccgcgacaccgccgacgggctggccaagcggcagttc
ccgggcatcgagatcctcccgctgtacgcccggcagaccaccgcggagcagcagcgggtg
ttcgcgccgaagcaggggtcgctgggccggcgcgtcgtgctggccaccaacgtcgccgag
acctcgctgaccgtccccggcatccgctacgtcatcgaccccgggctggcccgcatctcc
cgctactcgcggcggctgaaggtgcagcggctgccgatcgagaaggtcagccaggccagc
gccaaccagcgcgcgggccgctgcgggcgcgtcgccgacggcatctgcatccggctctac
gccgaggacgacttcgacgcccgccccgcgttcaccgacccggagatcctgcgcaccaac
ctcgcgtcggtggtgctgcagatgatctcgctggagctgggcgagatcaccgagttcccg
ttcgtcgacccgcccgaccggcgcagcgtcgacgacgggctcgcgctgctccacgagctg
ggcgcgctcgacgggaagcaggagctcacggccgtcggacgggcgctggccggcctgccc
gtcgacccgcgcctgggccggatgctcgtggaggccgaccgcaacggctgcctgcgcgag
gtgctcgtcatcgccgccgcgctgtcggtgcaggacccgcgcgagcggcccaccgagcag
cgccaggccgccgacgagaagcacgcccgcttcgccgaggacggcagcgacttcctcgcc
ttccgcaacctctgggcctacgtcgccgagcggcgccaggagctgtccggcagccggttc
cggaagacgctgcgcgaggagttcctgcactacctgcgcatccgcgagtggcaggacctg
cacgcccagctccgctccgccgcgcgcaacgcgggcatgacgccgaacgacgccgacgcc
tcccccgacgcgatccacacctcggtgctggccgggctgctctcgcagatcgggctgcgc
gaggcggagacgaaggagtacctcggcgcgcgcggggccaagttcatgatcttccccggc
tcgtcgctggcgaagaaggggccgcgctgggtgatggccgcggagctcgtcgagacgtcc
cggctgttcgcgcgcaccgtcgcccggatcaagccggagtgggtcgagccgctggccggg
cacctggtgaagcggtcgtactcggagccgcactggtcgcgcaagcgggcggcggccgtc
gcggtcgagcgggtcacgctctacggggtaccgatcgtcgtcgaccgcaccgtcgactac
ggccgcatcgacgccgaggtctcgcgcgagctgttcatccggcacgcgctcgtcgagggc
gactgggacacccggcaccgcttcttccacgccaaccgcgagctgctcgacagcgccgag
gagctggagaaccgcgcccgccgccgcgacctggtcgtcgacgaggagacgctcgtcgcg
ttctacgaggagcgcatccccgccgacgtggtgtccgggcggcacttcgacacctggtac
cgccgggcgaagcccgcgctcgagctcaccgaggagatggtgcgcaccgcgcaggcggcc
gaggtcgacgcggccgcgtaccccgaccacgtcgaggccggcgggctgacgctcccgctg
tcctacgcgttcgagcccgggaagcgcgacgacggcgtcaccgtcgacgtccccgtggcg
gcgctgcaccagatcgaccccaccccgttcacctggcaggtgcccgggctgcgcgaggac
ctcgtcaccgcgctgatcaagacgctgccgaagaacctgcgccgcaacttcgcccccgcc
cccgaccacgcccgcgcggtgctcgcgcgcctgcaggcgggcgacgagccgctgctcgac
gggctggagcgcgagctgggccggatgagaggagtgcgcatcccgcgggaggcctgggag
ctcgaccggctgccggagcacctgaccgtcacgttccgggtggtcgacgagcggggtcgc
gaggtcacgcgcggcaccgatctggaggcgatgcgccgcgagctcgcaccggaggtgcgg
gccgagctcgccgcggccggggtcgagctggagcgcaccggcctcacgacgtggagcatc
ggcacgctcccgcgcgagcacgcgatccggcgcgggcggcacaccgtcaccggcttcccg
gggctggtcgaccgcggcacctccgtcgacgtgcgggtgttcccgctcgccgccgagcgc
gaccccgcgcaccaccgcggggcccggcgcctgctgctgctcgacaccccgtcgccggcc
aagcaggtgcagcgcgggctcgacaactccgccaagctcgcgctctcgcgcaacccgcac
ggctccgtcgccgcgctgctggaggactgcacggtctgcgcggccgacgccctcatcgcc
gccgtcggcgggccgccgtgggacgagcgctcctacctgcggctgcagaaggtgttccgc
gagaagctggtgcccacgaccctgcaggtgctgcacgccgtccgcgcggtcctcgacgtg
cgcctgcgcgtgcaggccctgctcaccgatacgcaccgcacccccggcgtcgcggccggg
ctggccgacatcgaggcccagctcgccgatctcgtcgggcccggcttcgcgacggccgcc
ggcgcgtcccggctcggcgacgtcgcccgctacctcgaggccatcgagcggcgcgtcgag
aagctgcgcgtcgacccggtgcgcgacgacggctggaccgcccaggtccgcgtggccgcc
gacgagtacgccgccgagctcgccgccctgccccccggcgtcgagccggggccggagctg
cgcgagatccgctggatgatcgaggagctgagggtgggcctctacgcccacccgatgcgc
acccgctacccgatctcgatcaagcgcatccagaaggcgatcgacgacctcccgaggtga
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integrated database retrieval system
