Pseudonocardia petroleophila: H6H00_15810
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Entry
H6H00_15810 CDS
T08626
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppel
Pseudonocardia petroleophila
Pathway
ppel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H6H00_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppel03019
]
H6H00_15810
03009 Ribosome biogenesis [BR:
ppel03009
]
H6H00_15810
Enzymes [BR:
ppel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H6H00_15810
Messenger RNA biogenesis [BR:
ppel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H6H00_15810
Ribosome biogenesis [BR:
ppel03009
]
Prokaryotic type
rRNA processing factors
H6H00_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QNG55188
UniProt:
A0A7G7MQX7
LinkDB
All DBs
Position
3170474..3173575
Genome browser
AA seq
1033 aa
AA seq
DB search
MPPRPRPLPRRPLPRPPPPQAATPEAATPEAATPETAPAGTPAEPAADLAAAVAAADLSA
PELPLSFGSEPAARSAADAPLAPLFAPPAPLFQAPARPTRGRRRAAEEPAEPAVEETAGS
APEQEAPAAAVPASPGAPAEPETAAAASTEAPTGGPDADGSDDSDDDGSRRRRRRGRRGR
GRGRGADDESDDETTDSDSSDAAATADGPDESDASGDDAAQDGDAADSGPDEDSGDEEGS
GSRRRRRRRRRGSGDDAGDETDPPGTVTRIRAPRERSERSSDDSDGDGVQGVRGSTRLEA
KRQRRRDGRDAGRRRVPILSEAEFLARREAVDRVMVARERGDRVEIGVLEDDVLVEHFVA
DGGGRDGGTGRSMVGNIYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGEVDWDAAGLGGKA
RKIEQALHSGDPVLVQVTKDPVGHKGARLTTQISLAGRFLVYVPSGGAAGISRKLPDVER
KRLKDMLKEIVPSEAGVIIRTASEGVSHEALERDVRRLQAQWEVIDAKAKATGPNKPKAP
VLLYEEPDLLIKVVRDQFNEDFSKLVVQGDDAWDTLHNYIGHVAPELVDRMHRHVGPKDA
FAEYRIDEQLLKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKYTGSGGNLEETVTRNNL
ESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLSRDRTRHQVAEVTSLGL
VQMTRKRVGGGLLEHFSTTCEHCRGRGVLVDADPVPEKQPDTGRDQARPGEGRRTRGGRG
RRDGEDRNGSDRNGEDRNGSDRNGSDRNGGDAHGGDADGRDRNGHAAVDTGRNGHGPGEA
AGTVEVAETPAVVDVGAPAVVAEAESAAVVAGGVEDAVEEAVVERDVARTRPVAGPVLTD
VDPGVGGEGDGHQARPARRRGRVTRTAGAPTATEGDSPAAVVLTVPAPETAPAPVSQTPV
SQTPVSQTPTSQTPVSGTPAAQPALVPDPALAAVPPQPEPAPATTRVRRTRRAASRPAGP
PPAVDPTGGGDPV
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
gtgccaccccggccgaggccgctcccgagacggccgctcccgaggccgccacccccccag
gccgccacccccgaggccgccacccccgaggccgccacccccgagacggcccccgccggc
accccggccgagccggccgccgacctggccgccgccgtggccgccgccgacctctccgcc
cccgagctccccctctccttcgggtccgagccggccgcccggagcgccgccgacgccccg
ctggcccccctgttcgcgccgcccgcgccgctgttccaggcccccgcccggcccacccgt
ggccgtcgtcgcgccgccgaggagcccgcggagcccgccgtcgaggagacggccgggtcg
gccccggagcaggaggcccccgccgcggccgtccccgcctcgcccggtgcacccgccgag
cccgagaccgccgctgcggcgtcgacggaggccccgaccggcgggcccgacgccgacggc
tccgacgactccgacgacgacgggtcgcgccgccgccgccgccgtggccgccgcggccgc
ggtcgcggccggggcgccgacgacgagtccgacgacgagaccaccgactccgactcctcc
gacgccgcggcgaccgccgacggcccggacgagtccgacgcgtccggcgacgacgccgcg
caggacggcgacgccgcggactccggtcccgacgaggactccggcgacgaggagggctcc
ggctcgcgccgccgccgtcggcgccgccgccgcgggtcgggcgacgacgcgggcgacgag
accgacccgcccggcaccgtcacccgcatccgcgcgccgcgcgagcgctccgagcggtcc
tccgacgactccgacggcgacggcgtgcagggcgtccgcgggtccacccgcctggaggcc
aagcgccagcgccgccgcgacggccgcgacgccggtcgccgccgcgtcccgatcctgtcc
gaggccgagttcctggcccgccgcgaggccgtcgaccgcgtgatggtggcccgggagcgc
ggcgaccgcgtcgagatcggggtgctggaggacgacgtcctcgtcgagcacttcgtcgcc
gacggcggcgggcgcgacggcggcaccggccgctccatggtcggcaacatctacctcggc
cgcgtgcagaacgtgctgccgtcgatggaggccgcgttcgtcgacatcggccgcggccgc
aacgccgtgctctacgccggtgaggtcgactgggacgccgccggactcggcggcaaggcc
cggaagatcgagcaggccctgcacagcggcgacccggtcctcgtccaggtcacgaaggac
ccggtcgggcacaagggtgcgcggctgaccacgcagatcagcctggccggccggttcctg
gtctacgtgcccagcggcggcgccgccgggatcagccgcaagctgcccgacgtcgagcgc
aagcggctcaaggacatgctcaaggagatcgtccccagcgaggccggggtgatcatccgc
accgcgtcggagggcgtcagccacgaggcgctcgagcgcgacgtccgccgcctgcaggcg
cagtgggaggtcatcgacgccaaggcgaaggccaccggcccgaacaagcccaaggcgccg
gtgctgctctacgaggagcccgacctgctgatcaaggtcgtccgcgaccagttcaacgag
gacttctccaagctcgtcgtccagggcgacgacgcctgggacaccctgcacaactacatc
ggccacgtcgcgcccgagctggtcgaccggatgcaccggcacgtcggcccgaaggacgcg
ttcgccgagtaccgcatcgacgagcagctgctcaaggcgctcgaccgcaaggtctggctg
ccgtcgggcggcacgctggtgatcgaccgcaccgaggccatgacggtcatcgacgtcaac
accggcaagtacaccggctccgggggcaacctggaggagacggtcacccgcaacaacctg
gagtcggccgaggagatcgtgcgccagctccggctgcgcgacatcggcggcatcatcgtc
atcgacttcatcgacatggtgctcgagtccaaccgcgacctcgtgctgcgccgcctcacc
gagtgcctctcccgcgaccgcacccgtcaccaggtcgccgaggtcacctcgctcggcctg
gtccagatgacgcgcaagcgcgtcggcggcgggctgctggagcacttctccaccacctgc
gagcactgccgcggccggggcgtcctcgtcgacgccgacccggtcccggagaagcagccc
gacaccggccgcgaccaggcccggcccggcgagggccggcgcacccgagggggccgcggc
cgtcgggacggggaggaccgcaacgggtccgaccgcaacggggaggaccgcaacgggagc
gaccgcaacgggtccgaccgcaacggcggcgacgcgcacggcggcgacgccgacggccgg
gaccgcaacgggcacgccgccgtcgacaccggtcgcaacgggcacggccccggcgaggcc
gccgggaccgtcgaggtcgccgagaccccggccgtcgtcgacgtgggggcgcccgcggtg
gtcgccgaggcggagtccgccgcggtcgtcgcgggcggtgtcgaggacgccgtcgaggag
gccgtggtcgagcgggacgtcgcgcggacccggcccgtcgccgggcccgtcctcaccgac
gtcgaccccggcgtgggtggcgagggcgacggccaccaggcccgcccggcccgccgccgc
ggccgcgtcacccgcaccgcgggggcgcccacggcgaccgagggcgacagcccggccgcg
gtggtcctcacggtgcccgcgcccgagaccgccccggccccggtgtcccagacgccggtg
tcccagacgccggtgtcccagacgccgacgtcccagacgccggtgtccgggacgcccgcg
gcgcagcccgccctcgtgccggacccggccctggccgcggtgcccccgcagcccgagccg
gcacccgccacgacccgggtgcgccgcacccggcgtgcggcgtcgcgcccggcgggtccg
ccgcccgccgtcgacccgacgggtgggggagacccggtttga
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