Pseudonocardia petroleophila: H6H00_27020
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Entry
H6H00_27020 CDS
T08626
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppel
Pseudonocardia petroleophila
Brite
KEGG Orthology (KO) [BR:
ppel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppel03016
]
H6H00_27020
Enzymes [BR:
ppel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
H6H00_27020
Transfer RNA biogenesis [BR:
ppel03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H6H00_27020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF6416
Motif
Other DBs
NCBI-ProteinID:
QNG55878
UniProt:
A0A7G7MSW7
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All DBs
Position
5483132..5484391
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AA seq
419 aa
AA seq
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MPEGPDRSSTDGSAAEEGTPEGPAPTPLLAPADGLPPVVADRDALRATAAAFAAGTGPIA
VDAERASGFKYSQRAYLVQLRRAGAGTALVDPIPMGSDLSDLAPALTGPEWVLHAASQDL
ACLAETGLAPSRLFDTELAGRLAGLPRVGLGPMVENLLGLALEKGHGAADWSRRPLPQDW
LVYAALDVEVLVELRDVLTALLDEQGKLDWAHQEFEAVRTAGPPTPRAEPWRRTSGIHKL
RKPRQLAAVRALWEARDRLAAERDIAPGRVLPDAAIVDAAVTAPETAGALGGLPVFRGRS
QRRLTAYWWSALAAAERLDAADLPRPTAPAEGPPPVARWADRDPDAAARLAAARAAVAAI
GTERTVPVENLLQPDLLRRLCWTPPEDGDVAGFLRKGGAREWQIELLSPGLVTALAARA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
attccagagggcccagatcggtcgagcaccgacggttcagcggcggaggaggggacgccg
gagggaccggcacccacccccctgctggcgccggccgacgggctcccccccgtcgtcgcc
gaccgcgacgccctgcgcgccaccgcggcggccttcgccgccgggaccggccccatcgcc
gtcgacgccgagcgggcctccgggttcaagtactcgcagcgcgcctacctggtgcagctg
cgccgggcgggcgcgggcaccgccctggtcgaccccatccccatgggcagcgacctctcc
gacctcgccccggcgctgaccgggccggagtgggtcctgcacgcggcctcccaggacctc
gcctgcctcgcggagacgggtctcgcgccgagccggctgttcgacaccgagctggccggg
cgcctggccgggctcccccgcgtcgggctcggcccgatggtcgagaacctgctcgggctg
gccctggagaagggtcacggcgccgccgactggtcgcgccgcccgctcccccaggactgg
ctggtctacgccgcactcgacgtcgaggtgctggtggagctgcgcgacgtcctcaccgcg
ctgctcgacgagcagggcaagctcgactgggcccaccaggagttcgaggcggtccgcacc
gcgggcccgcccaccccgcgggccgagccgtggcggcgcacctcgggcatccacaagctg
cgcaagccccgccagctcgccgccgtgcgcgcgctgtgggaggcccgcgacaggctcgcc
gccgagcgcgacatcgcgcccggtcgcgtcctgcccgacgccgcgatcgtcgacgccgcc
gtcaccgcaccggagacggcgggcgcgctgggcgggctgccggtgttccggggccggtcg
cagcggcggctgaccgcgtactggtggtcggcgctggccgcggccgagcgcctcgacgcg
gccgacctcccccgcccgacggcccccgccgaggggccgccgccggtcgcccgctgggcc
gaccgcgaccccgacgccgccgcccgcctcgccgccgcccgcgccgccgtcgccgcgatc
ggcaccgagcgcacggtgccggtggagaacctgctgcagcccgacctgctgcgccgcctg
tgctggaccccgcccgaggacggcgacgtcgccggcttcctgcgcaagggcggggccagg
gagtggcagatcgagctgctgtcccccggcctcgtcacggcactggccgcccgcgcctga
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