Pediococcus pentosaceus SL4: T256_02355
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Entry
T256_02355 CDS
T02906
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T256_02355 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_02355 (uvrA)
DNA repair and recombination proteins [BR:
ppen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T256_02355 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T256_02355 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_21
AAA_25
AAA_22
nSTAND3
RsgA_GTPase
AAA_15
AAA_23
AAA_33
DnaJ_CXXCXGXG
NACHT
Viral_helicase1
ExoX-like_C
cobW
NB-ARC
DUF87
MMR_HSR1
MeaB
Septin
DUF402
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AHA04686
LinkDB
All DBs
Position
512711..515554
Genome browser
AA seq
947 aa
AA seq
DB search
MANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQP
ICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAKKGQHKKVFEKIKREGFVRVR
VDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG
GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKT
LREGAIAPWNPISSQYYPTLLEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHY
ENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLYMRELTCQTCHGYRLNRKALS
VKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL
SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNT
LVVVEHDEDTMWAADYLIDIGPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPV
PETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGVSGSGKSTLVNMVLKRVLAQK
LNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK
LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG
KTIADILDMTVEEATDFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAS
ELHKKANGKNFYILDEPTTGLHTDDIRRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI
DLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaatgataaaattgttatccacggtgcacgagcacataatttaaagaatattgat
gttaccattccacgcgataaactagtggtggtgacagggttatctggatcaggaaagagt
tcattggcttttgataccctctatgctgaaggtcaacgacgctacgtagaaagtttgtca
gcgtatgctcgtcaatttttagggcaaatggataagccagatgttgattcaattgatgga
cttagtccggctatttcgattgatcaaaagacaacttctaaaaatcctcgttcaacagtc
gggaccgtaaccgaaattaatgattatttaagactattatgggcgcgagttggtcaacca
atctgtcccaatgatggtacaccgattaccagtcagacggttgaacagatggtgaatcga
gttttggatttgccggaacgttccaaggtgcaaatcatctcaccgattgttcgtgctaaa
aaaggccaacataaaaaggtttttgaaaaaatcaaacgtgaaggctttgtgcgggtacga
gtagatgacgaaaccatggatgttgaagaagtaccagaattggataagaacaaagttcac
accattgatattgtggtcgaccgtgtggtggttaaagacggaattcggtctcgtttattt
gattcatttgaagcagctttacgcctcagtaagggttatgctacagcagatgtgattggt
ggcgaaccaatcttgttctcagaacattattcctgtccggtttgtgggttcacagtggga
gaacttgaaccccgactattttcatttaatgccccttttggagcatgtcctgaatgtgat
ggattaggaattaaattggaagtggatgaagatttagtcattccggatccatctaagacg
ttacgtgaaggagcaattgcaccttggaatccgattagttcgcaatattatccaacctta
ctagaacaagctgctaaaagttttggaattgatatggacactccttttgaggatttacct
aaagcagatcgccagctcgttttatatggttctaaaggtaagaaattccatttccactat
gaaaatgattttggtggagttcgggatgtggattccgtatttgaaggtgtaatggttaac
attgatcgtcgctatcatgaaactaatagtgatttcacgcgagatcaaatgcggttatac
atgcgcgaattaacgtgccaaacttgtcatggttaccgtttgaatcgaaaggctttatca
gtaaaaattgatggaaaacatattgccgaaatttcagctttacccatcgatagtgccatg
gaatttttcggtaatttaaacttttcggagcaggatacagctgttgccactccaatctta
aaagaaatcaaggaccgtttgaatttcttacgtaacgtgggattagagtatctaacttta
agtcgctcggctcgaacactttcaggtggagaagcccaacgcattcgtttggcaactcaa
attggctcgaatttatctggtgtgctatatattttggatgaaccttcaattggtttacat
caaagggataacaatcgattaattagttcccttaaaaagatgcgggatttgggtaacacg
ctagtagttgttgaacatgatgaagatacgatgtgggctgctgattatcttattgatatt
ggaccaggagctggtgaaaatggcggtgaagtcatggcagctggtactcctaagcaagta
gctaaaagtcgtaaatcactgacgggtaagtacctatccggaaagaaatttattccagtt
ccagaaactaggcgtacaggtaatggtcaatctattaaattaaaaggggttcaagaaaat
aaccttaaaaatattgatgttgacttcccattaggtgaatttgtcgctgtaacgggagtt
tctggctcaggtaaatctacgttagtcaatatggttttaaaacgagttttggctcaaaaa
ttaaaccataattctgaaaaaccaggtaaatataaatcggttagtggtattaaaaatatt
gaaaaagttatcaatattgaccaatctccaattggccggaccccacgaagtaatccggca
acttatacgagcgttttcgatgatataagaggcttatttgctcagactaatgaagctaaa
ctccgaggatatacgaaggggcgttttagttttaacgtcaagggtggacgctgtgaagca
tgtaagggtgacggaattctaaaaattgagatgaatttcttgccagatgtttacgttcct
tgtgaggtctgtcatggaacacgttataactcagaaacacttgaagttaagtacaaaggc
aagacaattgctgatatcttggatatgacggtggaagaagcaacagatttctttgctccc
atccctaagattgctcgtaaacttcaaaccattattgatgtaggattgggctacgtacat
ttagggcaatcagctactaccctatctggtggtgaagcgcaacgtatgaagttagcttcc
gaactacacaaaaaagcgaatggtaagaacttctatatcctagatgaaccaactactggt
ttgcatacagacgacatcagacgtttgttagatgtattacaacgtttggtagataatggt
aatactgttttagtaatcgaacataatttagatgtaattaaaactgccgatcatttgatt
gatctgggtcctgaagggggcgctggtggtggacaagtggtggctgttggtacaccagaa
gccattgctgcggtacctgaaagctatactggtaaatatttgaaagaagttctggagcgt
gctcaagaacttagtcagaaataa
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