Pediococcus pentosaceus SL4: T256_03660
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Entry
T256_03660 CDS
T02906
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03030
DNA replication
ppen03410
Base excision repair
ppen03420
Nucleotide excision repair
ppen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T256_03660
03410 Base excision repair
T256_03660
03420 Nucleotide excision repair
T256_03660
03440 Homologous recombination
T256_03660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppen03032
]
T256_03660
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_03660
Enzymes [BR:
ppen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
T256_03660
DNA replication proteins [BR:
ppen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T256_03660
DNA repair and recombination proteins [BR:
ppen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
T256_03660
NER (nucleotide excision repair)
GGR (global genome repair) factors
T256_03660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_2
eIF3_N
HHH_5
BCAS2
XPG_I
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AHA04881
LinkDB
All DBs
Position
738913..741576
Genome browser
AA seq
887 aa
AA seq
DB search
MAKDKLLLIDGNSIAFRSFFALHNSLSKFVNKNGLHTNAIFGFNKMLDSILEQYQPTAAL
VAFDAGKTTFRNGKFDNYKGGRSKTPPELSEQMPYLRELLTGYGIKSYELPNYEADDIIG
TLAKEAEAQDYAVVVVTGDRDLTQLSSEKTIVAVTKKGVSEVEEYTPAYVEEKLGVTPKQ
IIDIKGLAGDTSDNYPGVTKVGEKTAIKLLKQFDSLENLYEHLDELKPSKMKEHLIEDRD
NAFMSKDLATIRRDAPIEISLDDVQYAGINEEYLREFYHQMNFKSFLSKLDQTATQDGVE
AVKKEVVFNVLNKDNVEQLQSLKGEIDFYLEMLDKNYHLSDFTGFVIGNADNIWVSDDVE
LLNNSKIKAILEDPKIKVNVFDSKRTYVGLHRLGIKLTVVNFDILLQSYLLDTNDNSNDL
GQLAHEHDYDAIDTDDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELVKNEQ
NNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAGEEFNLNS
PKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYRTLSKIKSTYVDG
LLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIPVRIEEGRKIRQAFVPAREGWHIL
SSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTAVKIFGLKDASEVTPNIRRQAKAVN
FGIVYGISDYGLSQNIGISRKDAKKFIETYFKEFPGVKKYIDESVQLAKEQGYVETIAHR
RRYLPDINSSSFNLRSFAERTAMNTPIQGSAADIIKIAMIDMHNELEKRNLKSRMLLQVH
DELIFEVPDEEMMLMKELVPKVMDSAVKLDVPLKVGAAWGNTWYDAK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagataaacttttattgattgatggaaatagtattgcttttcggtcttttttt
gcgttacataattctttaagtaaatttgtaaataaaaatggattacatactaatgcaatc
tttggtttcaacaaaatgttagatagtattttagaacaataccagccgacagcggccttg
gtggccttcgatgctggtaaaaccacttttagaaatggaaaatttgataattataaaggt
ggtcggtctaaaacaccacctgaactatcagagcaaatgccttatttacgtgaattactt
acaggatatggaataaaatcttacgagcttcctaattatgaagctgatgacattattgga
acacttgctaaagaagctgaagcccaagattatgcggtagttgtggttacgggagatcgt
gacttaacccaattgagtagcgaaaaaacaatcgtcgccgttacgaaaaaaggggtaagc
gaagtagaagagtacacaccagcgtatgtcgaagaaaaattaggcgtaacacctaaacaa
attattgacattaaaggcttagctggagacacatcggataattatcctggggtaactaaa
gttggtgaaaagacggccattaagttgttaaaacaatttgattcattggagaatttgtat
gagcatcttgatgaattaaaacctagcaagatgaaggagcatttgattgaagatcgagac
aatgctttcatgtcaaaagatctagcaactattagacgggatgcaccgatagaaattagt
ctcgatgatgtgcagtatgccggtattaacgaagaatatttgagagaattttaccaccaa
atgaactttaagtcctttttaagtaaattagatcaaacggcaactcaagatggagttgag
gccgtgaaaaaagaggttgtttttaacgttttaaataaggacaacgtggaacaactccaa
tcattaaaaggtgaaattgatttttatttggaaatgttggacaaaaactatcatttgtct
gattttacgggatttgtgatcggaaatgccgataacatttgggttagtgatgatgtagaa
ctgttgaacaattcaaaaatcaaagctattttggaagatcccaaaattaaggtaaatgta
tttgatagtaagcggacgtatgttggcttacatcgactagggattaagctaacggtggtt
aactttgatatattgcttcaatcgtatttgttagatactaatgataattctaatgaccta
ggtcaacttgctcatgagcatgattacgatgcgattgatacagacgatgatgtttatggc
aaaggcgctaagcgtgcggttccagagcaaacagaattgtttaaccaccttgcacgtaaa
ttagcagctattaactttttaggtaaacaattggaccaagaattagtaaaaaatgaacaa
aataatttatattgggatattgaattaccactcgcaattgtattagccaagatggaaatt
agcggtattaaagttgaccgcaaccgcttaaatcaaatgcaaagcgagtttactgaacgc
ttaagtgaaattgaaaccaatatttacaacgaagcgggagaggaatttaatcttaattcg
cccaagcaactcggagtagtgctgtttgaaaagttaaaattaccaatcattaagaaaact
aaaacagggtattcaactgcggtagacgtcttagagaaattacaaggcgagtcaccaatt
attgataatattttgaactaccgtacgctttcaaaaattaaatcaacttatgttgatggg
cttttaaaagtaattcatacgactgatgaaaaagtgcatacaacctatgtacaaactttg
acccaaacgggccgactatcttccattgaccctaatttacaaaatattccggtgcgcatt
gaagagggtaggaagattcgccaagcctttgttccagctcgtgaagggtggcatatttta
tcatcggattactcacaaattgaattacgcgtattagcacatattacaggtgatcagaat
ttacaggaagcatttaaaaatggcgaagatattcatgctacaactgcagttaaaatattt
ggattaaaggatgctagcgaggtaactcctaatatccgacgtcaagctaaagcagttaat
tttggaattgtgtatggtatcagtgactatggtttgtcccaaaacattggaatttctagg
aaagatgccaagaaatttatcgaaacatactttaaggaatttcctggtgtaaaaaaatat
attgatgaatcagttcagttagctaaagaacaaggctacgtagaaacaattgcgcaccgt
cgacgttacttaccagacattaattcgtctagctttaatttacgttcatttgcggaaaga
accgctatgaatacgcctattcaaggtagtgctgctgatattattaagattgcgatgatc
gatatgcacaatgaattagaaaagcgtaacttgaagagtagaatgttactccaagtgcat
gatgaattaatttttgaagttccggatgaagaaatgatgttaatgaaagaattagtaccg
aaggttatggactcagcagttaaattggatgttccacttaaagttggagcagcttgggga
aatacgtggtacgacgctaaataa
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