Pediococcus pentosaceus SL4: T256_03665
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Entry
T256_03665 CDS
T02906
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T256_03665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_03665
Enzymes [BR:
ppen01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
T256_03665
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
T256_03665
DNA repair and recombination proteins [BR:
ppen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
T256_03665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Zn_ribbon_6
HscB_4_cys
LIM
DZR
Ribosomal_S13
DUF7573
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AHA04882
LinkDB
All DBs
Position
741589..742416
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETVRRGLAALVEGKIVTNVVVRYSKMVSPKAEIFAEELEGKKILNVRRRGKYL
LIDFSGDYTMVSHLRMEGKYSVVDRHEEYGKHDHVIFELDDGKDLRYNDTRKFGRMNLVP
TGEELQVGGLKTIGPEPTPETLTLEYLTHQLRNRKRGMKSFLLDQSMIAGLGNIYADEVL
WLSKIHPQQISNTLTDEEIAILRESIFEELQLAIEAKGTTVFSYLNADGHAGSFQNQLHV
YHRQGLPCQRCGTPIERIKVAQRGTHFCPHCQVLR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaaacagttcgtagaggcctagcagccttagttgaagga
aaaatagttactaatgttgtagtacgttattcaaaaatggtctcaccaaaagcggaaatt
tttgcagaagaactagagggtaaaaaaattcttaatgttcgacgacgcggtaaatatcta
ttaattgattttagtggagattacacgatggtttctcatcttcgcatggagggtaaatac
tctgtagttgatcgtcatgaagagtatggcaagcatgatcacgttattttcgagcttgat
gatggaaaagatcttcggtacaacgacactagaaaattcggtaggatgaatttggtaccc
acgggtgaggaattacaagtgggcggtttaaaaacgattggaccagaaccaacgcctgag
acccttaccttagaatatttaacccatcagctacggaatcgaaaacgtggaatgaaaagt
tttctattggatcagtccatgattgctggtttaggcaatatctacgctgatgaagtattg
tggctaagcaaaattcatcctcagcagatttctaatactttaactgatgaagaaattgca
attttgcgtgaatcaatttttgaagagttgcaattggcgattgaagctaaaggaacgacg
gttttttcttatttgaatgcggatggtcatgcgggaagttttcaaaaccagttgcatgta
taccatcgccaaggtttgccgtgtcagcgatgcgggacacccattgaacggattaaagtg
gcacaacgtgggacccatttttgcccccattgccaagttttgaggtag
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