KEGG   Pediococcus pentosaceus SL4: T256_04535
Entry
T256_04535        CDS       T02906                                 
Name
(GenBank) DNA-directed DNA polymerase III epsilon subunit
  KO
K03722  ATP-dependent DNA helicase DinG [EC:5.6.2.3]
Organism
ppen  Pediococcus pentosaceus SL4
Brite
KEGG Orthology (KO) [BR:ppen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppen03400]
    T256_04535
Enzymes [BR:ppen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     T256_04535
DNA repair and recombination proteins [BR:ppen03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    T256_04535
SSDB
Motif
Pfam: Helicase_C_2 RNase_T DEAD ResIII DEDDh_C AAA_14 AAA_22 Med11 Helicase_C RNaseH_pPIWI_RE
Other DBs
NCBI-ProteinID: AHA05048
LinkDB
Position
901094..903883
AA seq 929 aa
MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTG
ITDEQVQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTV
SLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIAIKKNLQQLPIVTLER
LVELGKDLPRQTLSILKDALYENKQNPQKIDVDLMVVDGVALKKPIALQTEHQADEKLVY
PRGKREKEQLYNGTLSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPL
SYIAREQQRKVVVSVPTTILQNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMKS
ITHQTLSKDSRLVAMKILVWLTKTDTGDFDEINHHINFSNFVDGIRHHGKTVLNPKSKFF
EYDFYRRAMKKLKYADFIITNHRYLALHADEIGESDQQPLLVIDEAQHFPTIVSNMNQKF
LDLNELMMETHRLVSRLVMNHRRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKL
FDKFVAPRKKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQE
LTPEIRDDWAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKEILDT
GEFYRQKIEPFYHKILLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFE
VLQSDFTIDYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNE
SRRIIAQGIHGSKAKIIREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPED
RMVQFARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFI
RQLPSGVNANLGNINEVKERVNNFFNNQE
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgaataaaacaaagtatgccgtcgttgatttagaaatgacaggtagtgatttcgatggt
gacaatcgaatcatccaaatcggatgcgcttttgttgaaaatggaaaaattgtggatacc
tttcaaagtaaggttaatccgcaaagaccgattccagcgggaattactaaactgacagga
atcaccgatgagcaggtgcaaaatgcccctaaatttaatgatattgtagatgaagtttat
cgaaaattagtcgatactgtttttgtagcccataatgtagaattcgattttcccttcttg
aatcaagaattggttcgtagtggatatcccgaacttaacattccagctgtcgatacggtt
tccctcagtcaaattgtcttttcatttaccaagggttaccgattacgtgatttaactagc
tatttaaaaattgaacatgatgatccacattctgctgatagtgacgccattgctacagct
aatttgctaattgcgatcaaaaaaaatctccaacaacttcccattgtaacgttagaacgt
ttagtggagttaggaaaagacttaccacgccaaacgctatcgattttaaaggacgctcta
tatgagaataaacaaaatccgcaaaaaattgatgttgatttaatggtggtcgatggcgtt
gctttaaaaaagccgattgctttacaaactgaacaccaagcagacgagaaattggtttat
cctcggggaaaacgagaaaaggaacagttatacaatggaaccttaagctggcgtaaatta
cagggttcaattatgaatttcacccatcaacagttttcggttacggaaggcttcaaaaag
catgtggttattgaagctcctaccggatctgggaaaaccttgggttatttattcccattg
agttatattgcacgtgaacaacagcgtaaagtagttgttagtgtacctacaaccatttta
caaaaccaagttctagcagtaggacgtcagcagttgaatgctattttagaaacgccgatg
cagtttgcaattctgaaagggagtagtaattatcttaatttagaagccttcatgaaaagt
attacccatcaaacgttaagcaaagattctcgcttggtggccatgaagattctggtatgg
cttactaagacggatactggtgattttgatgaaattaaccaccatattaacttttctaac
ttcgtcgatggcataagacatcatggaaaaaccgtgcttaacccgaaatctaagttcttt
gagtatgacttttaccgtagagcgatgaaaaagctgaagtatgcagactttattattacc
aatcatcgttatttagcattacacgccgatgaaattggagaatctgatcaacaaccatta
ctagtgattgacgaagcccagcattttccaacgattgtttccaatatgaatcaaaaattt
ctagacttaaacgagttgatgatggaaacccatcggttagttagccgtttagtaatgaac
cataggcgcaatttaattcaagcgactaaacatcaacccttagctggatttcatattcgg
cgctttgttaacagtctcgagcatattaatactcaaattacggagattcaacaaaagcta
tttgataaatttgtggctccgcgtaagaaaaatttatatgaaaaccaaccagccgagatt
gtcattaaaaataatgttattaaccaaatggctaagcacgaatttcatcaagtggttcag
gaattggccaatacatttattgagtttgatgcgttagatcgcttttttaaagaccaagaa
cttactccggaaattagggatgattgggctcaaatcaaagcttttcaaagtaatttaacg
aaattctacgatgctattcgagaaattactgatcatctcaatcaaaatatttactggatc
acgctaggtccaaatcatgatccgggaagtattcggattggtaaagaaattttagatacg
ggagaattctaccggcaaaaaatcgaaccattttatcataagattcttttaattggtgga
acgctattctttgaacataagcgtagttacttcttagaccaatttggcttgcataaaccc
gagacatcgatacggactttcagacgcggcgtggacttcgaaaaccagttagattttgaa
gtactacaaagcgactttacgattgattatgaaagcaaccaggatcaatatgctgacttt
ttggcagaggcaattgaagcgttgacgagggatgttaatcgtcaaacgctagttctcttt
aattctttagaaaccttgcgaaatgtttataataggctacatgattctgatttaaacgaa
agtcgcaggattatcgcgcaaggtatccatggttctaaagcaaaaatcattcgagagttt
aacgatgaagaaaatgctattttgtttggagcagcctctttttgggagggagtcgatttt
ccaggagatcgtttggaatatttaattgtgactcgcttgccattccgctcaccggaagat
cggatggttcaatttgcacgtaagaataagcgctcctcctttatgagttttgtcttacca
gatgccttgttaactttcaaacaagggatcgggaggttgattcgtaatagtgatgataca
ggggtagcagtaatgttagataaccgtattattaataaagattatggtaaattgtttatt
agacagctgccaagtggcgtaaatgccaatttaggtaatattaatgaagtcaaagaaaga
gtgaataatttctttaataatcaagaatag

DBGET integrated database retrieval system