Pediococcus pentosaceus SL4: T256_06235
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Entry
T256_06235 CDS
T02906
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ppen
Pediococcus pentosaceus SL4
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppen03019
]
T256_06235
03009 Ribosome biogenesis [BR:
ppen03009
]
T256_06235
Enzymes [BR:
ppen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T256_06235
Messenger RNA biogenesis [BR:
ppen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T256_06235
Ribosome biogenesis [BR:
ppen03009
]
Prokaryotic type
rRNA helicases
T256_06235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHA05344
LinkDB
All DBs
Position
complement(1214541..1215902)
Genome browser
AA seq
453 aa
AA seq
DB search
MNEFQKFNLKPFLMTALDEINFKTPTPVQDKVIPLIADGKSVVGQSQTGSGKTHAFLLPI
FNNIDPELNAIQAVITTPSRELAYQIYEDAKQLASASEVKIEIGNYVGGTDKKRQVEKLG
HHQPAIIIGTPGRVLDLLKERALNFRQVKYMVIDEADMTLDMGFLNAVDQIAAAMPSKLQ
ILVFSATIPQRLNVFLKKYMDHPVIEEIPTETTISPTIKNILISTKSSGKNNLIYKLLTM
GEPYLALVFTNTKERADELTDYLKAQGLDVAKIHGGIQPRERKRIMKDIHRLRYQYVVAT
DLAARGIDIDGVSLVINDDIPTDLEFFIHRVGRTGRNGMSGTAITLYMPNEEDKVADVEK
MGITFLPQQIRNNELVDTYDRDRRQTRRLSQKKLDPTMIGMVKKKKKKVKPGYKRRIRKA
ISEKEIRDRRMEQHQAVREAKKAKIKQSRNKRR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatttcagaagtttaatctaaaaccatttttaatgacggctttagatgagatt
aattttaagacacctacccctgtacaggataaagtgattccacttattgctgatggaaag
agtgttgtcggacaatctcaaacggggagtggtaaaacccatgcttttcttttaccaatt
tttaataatatcgatccggaattaaatgcaattcaagcagtaattacgacacctagtcgt
gaattggcttatcaaatttatgaagatgctaagcaattagcctcagcttcagaagttaag
attgaaattggcaattacgttggtggaactgataagaaacgtcaagttgaaaaattagga
catcatcaaccagctatcatcattggtacaccaggacgagttttggacttgctaaaggaa
cgggccttgaacttccgtcaagtgaagtatatggttattgacgaagctgatatgacctta
gatatgggatttttaaacgcggtagatcaaattgctgctgcaatgccatctaagctgcaa
attttggttttctcagctaccattccacaacggctaaatgtatttttgaagaagtatatg
gatcatccggtaattgaagagattcctaccgaaacaactattagccctaccatcaagaat
atcttgatttcaactaagagttctggcaaaaataatttaatttataaattattgactatg
ggagagccctatctagctttagttttcaccaacactaaggaacgtgctgatgagttgacc
gattatcttaaagctcagggactcgatgttgctaaaattcatggtggtatccaaccacgt
gaacgtaaacgaattatgaaggatattcatcgtcttcgttatcaatacgttgtagcaact
gatttggctgctcgtggaatcgatattgatggagtttcactagtaattaatgatgatatt
ccgacagaccttgaattctttatccatcgagtgggtcgtactggtcgaaatggtatgtca
ggaaccgcaatcaccttatatatgcctaatgaagaagacaaagtagctgatgtcgaaaag
atgggaattacattcttacctcaacagattcgaaacaacgaattagttgatacgtacgat
cgtgatcgtcgtcagacgcgtcgtctgagtcaaaagaagcttgacccaaccatgattggg
atggttaagaaaaagaagaaaaaggttaaaccaggttacaagcgtcgaattcgcaaagca
atttcagaaaaagaaattcgtgatcgtcgtatggaacaacatcaagcagttcgtgaagcc
aaaaaggctaagataaaacaatcacgaaataagcgaagataa
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