Pediococcus pentosaceus SL4: T256_07155
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Entry
T256_07155 CDS
T02906
Name
(GenBank) ribonuclease Y 2
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T256_07155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppen03019
]
T256_07155
Messenger RNA biogenesis [BR:
ppen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T256_07155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
DUF2746
KH_KhpA-B
KH-I_KHDC4-BBP
AMP-binding_C
FUSC
Motif
Other DBs
NCBI-ProteinID:
AHA05513
LinkDB
All DBs
Position
complement(1387235..1388797)
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AA seq
520 aa
AA seq
DB search
MATILIVVLLLASIGVGYGLRAKKHSETLAQARKAAEKIIEHERQKTKAEVAEYEKNSVQ
ETQQYQETIDQELADDLHDNQRKEAWIEQRMNLLNQKKIVLTNRADALAKKRQSLLQERD
NVRTTLGEAKQLITDRWNKLQEVADLEEQAASKLVLKETKQDAIRSKDEFVNNAQTELES
SCEREAEDLIALAMEHSDVPRGQAENHRSFIAENAEYLGKLIGNSGQNVRAIEALTGVDI
VIDDQEKEVILNGYDLVRRAVAMETMEMIKTEKRVVPDTIERLVNKANKVIDQRIRQYGE
DAVRELKLKYVAPDLIKFIGRMHYRTSYGQNILEHSIETAKLAGIFAVELGEDATLARRA
GLLHDIGKSIDRDIEATHVELGVELTTQYRESPVIVNTIASHHGDVEARYVIANLVEAAD
AISGARQGARSESVADYIQRIKSLEEIANKHPEVKESYAIQAGRELRVIVQPKETDDKTI
HSLATNVKNQIEEDVTYPGQVKVTVVRKLEIVEYVEKKQA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgattttgatcgtcgttttgctattggcttccattggagtagggtatggattg
cgagccaaaaagcatagtgaaacattagcgcaagcccgcaaagcggcagaaaaaattatt
gaacatgaacggcaaaaaactaaagccgaagtggctgaatatgaaaaaaatagtgttcaa
gaaactcaacaatatcaagagaccattgaccaagaactcgcagatgatctacatgataat
caacgtaaagaggcgtggattgaacaaagaatgaacttattgaaccaaaaaaagattgtg
ttaactaatcgagcagatgcattagctaaaaaaagacaaagtctattacaagaacgtgac
aacgtacggacaactttaggcgaagctaaacaactaattactgatcgatggaataaactt
caggaagttgctgatttggaagagcaagcagcttcaaagttggttttgaaagaaactaaa
caagatgcaattcgttctaaagatgagtttgttaataacgctcaaaccgaattagaaagc
tcctgcgagcgtgaagctgaggatttgatagctttagctatggaacatagtgatgttcca
agaggtcaagccgaaaatcaccgcagttttattgcagaaaatgctgaatatcttggtaaa
ctgattggaaattcaggacagaatgtacgagcaattgaagcattaactggtgtagatatt
gtgattgacgaccaagaaaaagaggtcattcttaacggttatgacctagttcgtcgagca
gtggccatggaaaccatggaaatgattaaaactgagaaaagagttgttccagatacaatc
gaacggttggttaataaggctaataaagtaattgaccaacgtattcgccagtatggggaa
gacgcggttcgagaattgaaattaaaatatgttgcgccggatttaatcaaatttattggt
cgaatgcattaccggacgagttatggacaaaatattttagaacattctattgaaactgct
aagctagcaggtatttttgctgttgagttaggtgaagacgctactttagcacgacgtgca
ggtttactacatgatatcggtaaatctattgatcgcgatattgaagcgactcatgtggaa
ttgggtgtggaattgaccacccaatatcgagagagtccagtgatagtgaatactattgct
tctcaccatggggatgttgaagctcgatacgtaattgctaatttggttgaggcagcggat
gccatttctggagctcgtcaaggtgctagaagtgaatcagtggctgactatatccaaaga
attaagagcttagaagagattgctaacaaacatccagaagtcaaggaaagttatgctatc
caagctggtcgtgagcttcgagtaattgttcaacctaaagagacagatgataagacgatt
catagtttagctactaacgtaaagaatcaaattgaagaggatgttacttatcctggtcag
gtgaaggtaacggttgttagaaagttagagattgtagaatacgtggagaaaaaacaagca
tga
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