Pediococcus pentosaceus SL4: T256_07705
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Entry
T256_07705 CDS
T02906
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T256_07705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppen03019
]
T256_07705
03009 Ribosome biogenesis [BR:
ppen03009
]
T256_07705
Enzymes [BR:
ppen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T256_07705
Messenger RNA biogenesis [BR:
ppen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T256_07705
Ribosome biogenesis [BR:
ppen03009
]
Prokaryotic type
rRNA helicases
T256_07705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Helicase_RecD
Cystatin
Motif
Other DBs
NCBI-ProteinID:
AHA05612
LinkDB
All DBs
Position
complement(1493385..1494965)
Genome browser
AA seq
526 aa
AA seq
DB search
MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPIL
QNVDLDNPNIQAIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALKSHP
QIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQTLLF
SATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEKFDILTRVLDVQAPK
LAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFRERQLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDVEHLTKK
RLLPMKPPTEEEAFAGRAAMAEQSIEELVQKTDVAKFEEQVDHLLEQHDAKTLVAALLNE
VTKSDASEIKVKITPERPLPRKKGGNKGGKGGGGYRGGNRRGGNGRRSNGNSSNGGGRGG
KWNNDRKGGGKSRFGRDDRNHNGGKRNDRNSGNKGGSNRQFVIKEK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaccgaactagggttagacgaagacattttaaaagcagttttagacaatggg
tatgacgaaccaacacctatccaagctgaaactattcctggtgttttagaaggaaaagac
atcattggacaagctcaaacaggtactggtaagacagctgctttcggattaccaatccta
caaaatgttgacctagataatcctaacattcaagcaattattatctcacctacacgtgag
ttagctgctcaaacacaagcagaaatctttaaattaggaaaatataaaaaagctaaagtt
caagtggtttacggtggatcagatatccgtcgtcaaattaatgctttaaagagccatcca
caaatcgtggttggtacacctggtcgtttgttggaccatattggtcgaaagacaattcgt
ttagaccacgttaaaacattagttcttgatgaggctgacgatatgctagatatgggattc
ttacctgatatcgaacacattattgaacaaacacctagcgaacgccaaacattattgttc
tcagccacaatgccagcaccaattaagaaaattggtgttaagttcatgactgatccaaaa
caaattacagttaagtctaaagagcttactgctgatttggttgatcaatactacgttcgt
tctaaagaattcgaaaaatttgatattttaacccgcgtacttgatgtacaagcgccaaaa
cttgcagttatttttggtcgtactaagcgtcgcgttgatgaagtttctaagggattagtt
actcgtggttacaatgctgctggaatccatggtgatttaactcaacaacgccgaatgagt
attttacgtcaattccgtgaaagacaattagatattttagttgctactgacgttgctgca
cgtggacttgatatctctggtgtaactcacgtttacaactatgatattcctcaagaccca
gaaagttatgttcaccgtattggtcgtacaggccgagccggtgctacaggtacttcagta
accttcgttactaactgggaaatggactatcttcgtgacgttgaacatttgacaaagaaa
cgtttgttaccaatgaagccaccaacagaagaagaagcttttgctggacgtgctgcaatg
gctgaacaaagcattgaagaattggttcaaaaaacagatgttgctaagtttgaagaacaa
gttgatcatcttttagaacaacatgatgctaaaacgctggttgctgcacttctaaatgaa
gtaactaagtctgacgctagtgaaatcaaagttaagattactcctgaacgcccacttcct
cgtaaaaaaggtggcaacaaaggcggtaaaggtggcggcggataccgtggcggaaatcgt
cgtggtggtaatggtcgtcgtagtaatggtaatagtagcaatggcgggggccgtggtggt
aaatggaataacgatcgtaagggtggcggcaagtcacgctttggtcgcgatgaccgtaac
cacaatggtggtaagcgtaatgatcgcaactcaggtaacaagggtggatcgaaccgtcaa
tttgtaattaaagaaaaataa
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