Pediococcus pentosaceus SL4: T256_07745
Help
Entry
T256_07745 CDS
T02906
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T256_07745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppen03021
]
T256_07745
03019 Messenger RNA biogenesis [BR:
ppen03019
]
T256_07745
Transcription machinery [BR:
ppen03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
T256_07745
Messenger RNA biogenesis [BR:
ppen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T256_07745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA
OB_RNB
AAA_25
ABC_tran
Spore_III_AA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AHA05620
LinkDB
All DBs
Position
complement(1501677..1502963)
Genome browser
AA seq
428 aa
AA seq
DB search
MDNFLTMNDLQEMTLKEIYGLAREYKISYYSQMNKKELSLAVLRAQAKKKSFVEMEGVLD
IVGNDGYGFLRPINYGSSQEDIYISASQITRFGLRNGDLVGGEARHPKPGERYYGLMRVT
SVNNKDPEEAKQRPHFPALTPIYPNQQLKLETTSNILSTRLVDLFSPIGFGQRGLVVAPP
KAGKTTLLKAIANGITTNYPDVKLIVLLIDERPEEVTDLERSIKGEVVYSTFDQDPRNHT
RVSELVLQRALRLVEDKQDVVVLLDSITRLTRAYNLVTSPSGRTLSGGVDPAAFYKPKKF
FGSARNIEEGGSLTIIGTALVDTGSRMDDVIYEEFKGTGNSELVLSRNLAERRVFPALDI
RQSGTRKEELMVSKDILNQLWDIRRSMRGDALEYTEQVLKLLKNTKNNEAFIANLKNLNL
GPNGSKKS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggataattttttaacaatgaatgacttgcaagaaatgactctcaaagaaatatacggc
cttgcccgtgaatataagatttcatattacagccagatgaacaagaaggaattgtctctg
gctgttttgcgtgctcaggctaaaaagaagtcatttgttgaaatggaaggcgttttagat
atcgttggaaatgatggatatggttttttacggccaatcaactatggttcttcgcaagaa
gatatctatatttcagcatcgcaaatcacacgtttcggtttgcgtaatggggatttagtt
ggtggtgaagctcgccatcccaaaccaggtgaacggtattatggattaatgcgggttact
tcagtgaataataaggacccagaagaagctaagcaacgtcctcattttccagctctaacc
cccatctaccccaatcaacaattaaaattagaaacaacttctaatattttatcaacgcga
ttagttgatttgttttcaccaattggatttggacaacgtggtctggtagtagcaccacct
aaagcaggaaaaaccactttactaaaggctattgctaacggaattaccacaaactatcca
gatgtgaagctcatcgttttactaatcgatgagcgaccagaagaagtaacggatttagaa
cgctcgattaagggagaagtggtttattccacctttgatcaagacccccggaatcatact
cgtgtttcagaattagtattacaacgggcgcttcgtctagtagaagataaacaagatgtt
gttgtcttactagattcaattacgcgattaacccgtgcatataatttagtgacctcccct
agtggtcgaacactttctggtggtgttgatccggcagcgttttataagcctaaaaaattc
tttggctctgctcgaaatattgaagagggtggatcacttaccatcattgggacagctttg
gttgatacaggaagccggatggatgatgtgatttatgaagaattcaaaggtacgggtaat
tcagagctagtcttatcacggaatttggctgagcgcagggtatttccggcgttagatatc
cgtcagtcaggaactcgtaaagaggaactaatggtctcaaaagatatacttaatcagctt
tgggatattcgccggtcgatgcgtggagatgctctggagtatacggaacaagtgctcaag
ttattgaaaaacactaaaaacaacgaagcgtttattgctaacttaaagaatttaaattta
ggtcctaatggtagtaaaaaatcttaa
DBGET
integrated database retrieval system
