Pediococcus pentosaceus SL4: T256_08505
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Entry
T256_08505 CDS
T02906
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
T256_08505
09124 Replication and repair
03420 Nucleotide excision repair
T256_08505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppen03021
]
T256_08505
03036 Chromosome and associated proteins [BR:
ppen03036
]
T256_08505
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_08505
Enzymes [BR:
ppen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
T256_08505
Transcription machinery [BR:
ppen03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
T256_08505
Chromosome and associated proteins [BR:
ppen03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
T256_08505
DNA repair and recombination proteins [BR:
ppen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
T256_08505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
Helicase_C
HBB
PhoH
Myco_19_kDa
Motif
Other DBs
NCBI-ProteinID:
AHA05764
LinkDB
All DBs
Position
complement(1659596..1661947)
Genome browser
AA seq
783 aa
AA seq
DB search
MSVTKIGIRQLVEFILRTGGLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVE
MDGETFTIEGRADGVVIDDDLFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLD
FDKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQYEKWIKLRNDWRTERNQAAR
KLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI
FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDR
VKDGIEDALENEDKFDKTVIQTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQ
RFFTIEDQSSFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQELFESSTTDVDSKQVKRRL
TQLDNEFELIHQAFKNQTEDYMVEYSPLDGLEKAMLNFNEVVREWLPKQPDNDLTNTMLD
LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATL
SPVEYYQETLGSTEGLILQMASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVE
AKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVHLQTSQMSMEERTAFLDAFRTEKSGTLV
GFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG
MNHVLQSAGRLIRTRRDRGNILLMDQRFVTFRYLNLFPRHWKNYQKVTSVSDLQKAVKAF
WKL
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaactaagataggaattcgacaactagttgaatttattttgcgtacgggtggc
ttgaacgcgacgatgaatagtcaaaatactgcattagagggtgcccgcatccatcgtaaa
ttgcaaaagcaacgtgatgaaaattacgaaaaagaatactacgttaaacgagccgttgaa
atggatggggaaacttttacaattgaaggtcgtgcggatggagtagttattgacgatgac
ttgtttatcgaagagattaaaacttcggatcctacttttgaagagttaagtgagaatact
aagacattgtattggagccaagcaaaagtttacggagcgattttgacgcaagacttagac
ttcgacaaagtgaccattcaactgacttattatcaacgtccaaccgacgaagtgattgaa
aaaagacaaacatttacccgaacagaactgaccgaattttttgatgatttggttagacaa
tacgaaaagtggattaagctacgcaatgattggcgtactgaacgtaaccaggcagcgcgc
aaattagaatttccatttccagagtatcgaaatggacaacgagacctagcagttgcagtt
tacaaaactattttaactaaacaacgcctcttcgtagaagctccgaccggaacgggaaaa
acagtttcaacgatgtttccgaccattaaagccctgggtgaggaagttattgaacggatt
ttctatttgacggctaagcaaagtactcagcacgtcgccgaagaagctatcgaactgatg
gctaatcaaggattgagaattaaatccattacaattacagctaaagatcgaattatattt
cctgaagaagtggatatgaaaccagaagaaaatccatacatgattgggtattatgatcga
gtaaaggatgggatagaggacgccttagaaaatgaagacaagttcgacaaaactgttatt
caaacgtatgcgaagaagtatatgttagatcctttcgaattttcattagatttatcttta
ttttgtgacttaattattggagattacaattatttgtttgatcccatggtttatctccag
cgcttttttacaattgaagaccaaagtagtttctttttaattgatgaggctcataatttg
gtgtcgcgttctagagcaatgtattcagcggtggtagagcaagctttggtaattcaagca
caagaactttttgaatcctcaaccacggatgtggactcgaaacaagttaaacgtagattg
acccaattagataatgaatttgagttgattcatcaagcatttaaaaatcaaacagaagat
tacatggtggaatatagtccactagacgggctggaaaaagccatgttgaacttcaatgaa
gtagtccgggaatggctgcctaaacaacctgataacgatttaaccaataccatgttggat
ttgttttttgccaacaataaatacattaagatcagtgaatattttgatgaaagttatcgg
attttaattcaaaatcccgaagataatataaaaatcgaagaacagattctagatcccagt
ccctatttagatgcttcattaaaaaagggacgcggggcgattttcttttctgctacgtta
tcgcccgttgaatactatcaagaaactttgggaagtacggaaggcttgatcttacagatg
gcttcaccattcgaagaaaaacagcaaaatcttttaattactagttatattgatactaga
tatgcggcgcgccaaagaaatttacctaacatcatcgcttcgatcgcaactctggtggaa
gccaagacggggaactacttaatttttggaccatcctatgcctatttaaatcaaattgcg
gatgcatttcaggaaatgcatcctgaaattgaagttcacctgcaaactagccagatgagt
atggaagagcggacagcatttttagatgcttttcggaccgaaaaatcgggaacattagtt
ggttttgcggtgttaggcggactcttttcagaaggaattgatttaattaacgagcaacta
attggtgtagggattgtaagtgtaggattaccgggcttgagtacagaaagaaatttgctg
aaagaatattttgacgaaaaaaatggtcatggatttgagtacgcatatcaattacctgga
atgaaccacgttcttcaatcagcggggagattaattcgaactcgacgagatcgaggtaat
attttgttaatggatcaaagatttgtcacattccgttatttaaatttatttcccaggcat
tggaaaaactaccaaaaagtaacttctgtaagcgatttacaaaaagcagtcaaagcgttc
tggaaactgtag
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integrated database retrieval system
