Paenibacillus peoriae: ABE82_12750
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Entry
ABE82_12750 CDS
T04053
Name
(GenBank) DNA-directed RNA polymerase subunit sigma
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppeo
Paenibacillus peoriae
Pathway
ppeo02020
Two-component system
ppeo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABE82_12750
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
ABE82_12750
09142 Cell motility
02040 Flagellar assembly
ABE82_12750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppeo03021
]
ABE82_12750
Transcription machinery [BR:
ppeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABE82_12750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_24
HTH_23
HTH_11
HTH_3
HTH_IclR
MarR_2
HTH_26
DUF7343
Sigma70_r4_2
HTH_36
Sigma70_r4
MarR
HTH_Tnp_ISL3
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
ALA42333
LinkDB
All DBs
Position
complement(2949599..2950981)
Genome browser
AA seq
460 aa
AA seq
DB search
MIRYGLQQEQGFKLVMTPELRQAITILQYSSADLISFLHEQANNNPVIDLPEFNMSIGGI
KEEAEQFSQKDQGELIEHYRGGEKYPSVQRATPVTFLDFVPNPNDTLFEHLNRQLGLVCG
LTNSQRMVARYLIGNLNEMGYLELDVPTVASLVDVSIAEIEDMLLVIQSFDPPGIASYSL
EECLLLQLQLAGMDDECIVRMVSNHLADLANNRIQKIADALEIGRREVIQLADRIRKLNP
CPGAAFAHKEQQYIIADITVEKANGEYLVLINDISAPRVEINPFYQQMMRDLPNSETKLF
IHEKMNTAKWLINSLKQRRLTLLRVAKAIVEKQQDFFEHGVSFLKPITQKEIAEKTGLHE
STVSRAVSNKFIQTPRGLFELKFFFTSSLTSADGDAASSESAKKRIKNLIDDEDKQKPLS
DQAITTLLGKEGLHLSRRTVAKYREELRYLSSAKRKKFEV
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgatacgatatggattacaacaggaacaaggattcaagctggttatgacgcccgaattg
cgacaagcaatcacgattttgcaatattcttcggctgatttaatatcctttctgcatgaa
caggcgaacaataatccagtcattgatttgccggagtttaatatgtccattggcggtatc
aaagaagaagcagagcagttttcacagaaagatcaaggagagctgattgaacattatcgt
ggcggagaaaaatatccatcggtccagcgagcaacccccgttacatttctggactttgtc
cccaatccgaatgataccctgtttgaacacctgaacaggcagcttggactggtatgtggg
cttacaaattcacagcgtatggtggcacggtacctcattggcaatttgaacgaaatggga
tatttagaacttgatgttccaacagtcgcctcactagtggacgtttccatagccgaaatt
gaggatatgctcttggtgatacagagttttgatccaccggggatcgcctcttacagcttg
gaagagtgtcttcttctccagctccagcttgctggcatggatgatgaatgcatagtcaga
atggtaagcaaccatctggctgatctggcaaacaatcggatacaaaaaattgcggatgct
cttgaaatcggtaggcgagaggttatacagctggccgatcgaattcgcaagctaaatcca
tgcccgggcgcagcatttgctcataaagagcagcaatacatcatagcagatatcacggtc
gaaaaagccaacggcgaatatcttgtcctgattaatgacattagtgcgccgcgggttgag
atcaaccctttttaccagcaaatgatgcgggatctaccgaatagtgaaaccaaacttttt
atccatgagaagatgaatacggcaaaatggctgatcaatagcctgaagcaacgtcggctg
acccttctacgggttgccaaggccattgtggaaaagcagcaggatttttttgagcatggc
gtgtctttcctcaaaccaatcacccaaaaggagattgccgaaaagacgggcttacacgaa
tccacggtcagcagggcggtcagtaataaatttatacagacgcctcgcggattgttcgaa
ctcaaattcttctttacttcctccttgacgtcagcggacggagatgctgcttcatcggag
agtgcaaaaaagcgtatcaaaaatttgatagatgatgaggacaagcaaaaaccgttatcg
gatcaggctattactaccctgctgggaaaggaaggtttgcatttatcacgcagaaccgtg
gcgaaatatcgagaagaactaagatatctttcttctgccaaaagaaaaaagtttgaagtt
tga
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