Paenibacillus peoriae: ABE82_25455
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Entry
ABE82_25455 CDS
T04053
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppeo
Paenibacillus peoriae
Pathway
ppeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE82_25455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppeo03019
]
ABE82_25455
03009 Ribosome biogenesis [BR:
ppeo03009
]
ABE82_25455
Enzymes [BR:
ppeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABE82_25455
Messenger RNA biogenesis [BR:
ppeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABE82_25455
Ribosome biogenesis [BR:
ppeo03009
]
Prokaryotic type
rRNA helicases
ABE82_25455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALA44630
LinkDB
All DBs
Position
5902994..5904439
Genome browser
AA seq
481 aa
AA seq
DB search
MSQKHFTDYALSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PLCELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLDRIAHLVIDEADEMLNMGFIEQVQSIIQALPSDRVT
MLFSATFPEDVATLSRKYMKDPVRIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVE
NPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEAY
IGFAIPQVKAPSEEAVDLRREDFEQKLHVKTALKKDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVTADDIGIITILDYATDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagaagcattttacagattacgcattaagtgaagaaattgtaagagcgctcaat
agcttgggctatgagacgccaacagagattcaaacggaagttattcctgttgcgcttgag
aagaaggatcttgtcgccaaatcgcaaacaggtagcggcaaaacagcagcatatggtatt
ccactttgtgagctagtagattggaatgagaataagccccaagctttaatcctgacgcca
acccgtgaactcgcattacaggtcaccgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacacccctttatggaaaacatccttttcatatccaaaaggctgagttaaaa
caaagaacgcatgtggctgtaggtacgccaggacgtgtactggaccacattgaacgaggc
acgctatcgttagatcggattgcccatctcgtgattgatgaagctgacgagatgctgaat
atgggctttatcgagcaagtccagtcgattattcaagcgctgcctagtgaccgggttacc
atgctattctccgctaccttccctgaggatgtagccacactgtcacgtaaatatatgaaa
gatcctgttagaattgagattaaagcaactggtataacgaccgccacaattgatcactct
cttattcaggtgaaggagtcagacaagctggcactactgcaagatctgctcattgttgag
aatcctgacagctgcattattttctgtcgtacgcaggagaatgtagatacattattcaga
gcattggctgatctcgaatatccatgtgatcgcattcatggtggcatggagcaagacgag
cgatttgaggtaatgaatgcattcagaaggggtcaattccgttacttgatcgcgacagat
gttgccgccagagggattgatatcacgaatatcacccatgtcattaactacgatattccc
cttgagaaggaaagctatgttcaccgtacaggacgtacgggacgtgctggcaaaacgggg
aaagccatttccctcatcactcctaaggatggcagaagattagctgatattgaagcatat
attggattcgcgattccgcaggtaaaggccccctcagaagaggctgttgatctccgtaga
gaagattttgagcagaaactgcatgtaaaaaccgcactcaaaaaagataagcgcgagcaa
ctaaaccaacagattatgaagctgaattttaacggcggtaagaagaaaaaacttagagct
gtcgacttcgtggggaccatcgctaagcttgacggagtcaccgcagatgatatcgggatc
attacgattctggattatgcgacagatgttgagattctgaatggtaaaggtccactggtg
cttgagattatgaagaatacaaccgtaaagggtaagctgttaaaggtacgcaaagggaat
aagtag
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